| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0446 |
|---|
| Symbol | |
|---|
| ID | 6088517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 486833 |
|---|
| End bp | 487645 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641595508 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001719202 |
|---|
| Protein GI | 170022697 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.596679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCAT CCCATGAGAA TTACCGGATT TTTGCTATCA AGTTCGCTCA TCACCACCGG
CTAACCCGCG ATAACTTTCT GGGGGGAGAT CCACACGACG GGCCGATGCC GATTGACTAT
TTTGTCTGGG CCATCGTAGG GACCACGCGC ACGATTATGG TTGATACCGG ATTTGATGCT
GCCATGGCCC GTCAGCGTGG CCGGACCATC ACGCATTGCA TTGAAGACGG TCTGAGCCAA
CTTGGCATTG ATGCGGGAAA GATTGAAGAC GTCATTATTT CGCATATGCA CTATGACCAT
GCGGGTAATC ACGGATTGTT TCCCAACGCG CGTTTTCATC TTCAGGATCG TGAGATGGCG
TTTTGTACTG GCCGCTGTAT GGGCCATCAC GGCTTAAGTC AGGCTTTTGA TGTAGAAGAT
GTTAAAGCGA TGGTAGGGAG GCTATTCGCT GGGCGTCTAC AGTTTCACCA TGGGGATGCC
GAGATTGCCC CCGGTATCAG TGTTCACCGT GTCGGTGGGC ACACTGACGG CTTACAAATC
ATACGAGTAC ACACCGCCCG TGGCTGGGTG GTGTTGGCAT CGGATGCCAC GCATTTCTAC
GCTAATATTC AGCAACGCCG GCCTTATCCA ATCCTTTATA ACGTTGGCGA TGTCTTGGAA
GGCTACAACA CACTTTATCG CTGGGCCGAT TCATTCGACC ATATTATTCC CGGACATGAT
CCGATGGTGT TGCAACGTTA CCCAGCGGGC ACGCCGGAAA CGGCCGCATG GATCGCTCAG
GTTGATGTTG CCCCCCTCAC TCAGTGGACG TGA
|
|---|
| Protein sequence | MSASHENYRI FAIKFAHHHR LTRDNFLGGD PHDGPMPIDY FVWAIVGTTR TIMVDTGFDA
AMARQRGRTI THCIEDGLSQ LGIDAGKIED VIISHMHYDH AGNHGLFPNA RFHLQDREMA
FCTGRCMGHH GLSQAFDVED VKAMVGRLFA GRLQFHHGDA EIAPGISVHR VGGHTDGLQI
IRVHTARGWV VLASDATHFY ANIQQRRPYP ILYNVGDVLE GYNTLYRWAD SFDHIIPGHD
PMVLQRYPAG TPETAAWIAQ VDVAPLTQWT
|
|---|
| |