Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0401 |
Symbol | |
ID | 6087145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 439588 |
End bp | 441810 |
Gene Length | 2223 bp |
Protein Length | 740 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641595465 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001719159 |
Protein GI | 170022654 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTGCTC ATGATAAAGC TAATAATAAT AAAGCCGCGG ACAAGACCGG CACGGTGACG CCGACCCATA TCGTCTCGCC GGAGGCCGCC CCAACCGTGA GTGGCGCTCA GATGACCGAG ATAGCCGGGG GGATCGGGGA TGCGGTGGGC GGCACTGCCG GTAAGCGCAT CAATCAGGCC GCCGAGGTGG CTAAAACTGC CCTGGATGCC AAGGCAAAAG TACTGGACGG CGGCGTCACG CCGCTGAATC TGGCCGCGGG CGGGGCCGGG GCGGGATTGC CGGACAGCGT GGCGGCGGCG CTTACCCGCC TGGTCAAACA GCCCTCAGGC CTGCAATTTA CCCTGACGGC GGCCGGTTTA CCGCCCCAGA CCTTTGCGGT GGTGGATTTC ACCCTGAGCG AGATGCTCTC CTCGCCGTTT GTGCTCAATG TCGGGCTGGC GAGTGCCGAT CCGGCGGTGG ATTTTGCGGC GGTATTGGAT GAAGACGCCA CGCTGTTTAT CTGGCGAGAA GGGGTACTGC AACGCAGCAT CACCGGCATG GTCGCCAGCT TTGAACAGGG TGATACCGGT TTTCATCAGA CCCGCTACAG CATGGTGATC CGCCCGGCGC TGTGGCGCAC CAGCCTGCGG CGCAATGCCC GCATCTTCCA GCAGGCCTCG GTGGAAGAGA TCATCACCAC CCTGCTGAAA GAGAACGGCA TCAACGATTT TGCTTTTGGT TTTCGCCACC CGCACCCGGT GCGCGAGTTC TGCGTGCAAT ATCAGGAGTC CGATTTTGAT TTTATCCAGC GCCTGACGGC AGAAGAGGGG ATTTTCTACT ACTTCGAGTT CAGCGCCGGG AAAAATACCG TGGTGTATGC CGATGATGTT GGCTCCCTGC CGAAAGGCGC GTCACTGCCC TATAACCCGA ATGTGGCGGC GCAGGCGCAG GAACTGAGTA TCACCACCTT CACCCGCAGT GCGCAGGTGC GCCCGGCGAT GGTGCAACTG AAAGACTACA CCTTTAAAAA CCCGAACTGG GCCGCGGCCT TCAGCGAACA GTCGGGAGAA CTGCAAAACC AGCGACCGGA CTACGAGCAT TTTGATTTTC CGGGGCGCTT CAAAGATGCC CAGCACGGGC AGGATTTTAC CCGCTACCGG CTGGACGCAC TGCGCAATGA CGCCAATCTG GGGCAGGGGG CGAGCAATGA TTTTACCCTC CAGCCGGGGC AGTTGTTCAG CCTGTACAAC CACCCACGTA GTGACCTGAA CCACGCCTGG CAGTTGCTCG GTATTCAGCA CAGCGGCAAA CAGATGCAGG CGCTGGAGCA GGCATCTGGC GATCAGGGCA CGGTGCTGTT CAACCACTTC AGTTTTATTC CGCACACCCA GACCTGGCGG CCGACGCCGT TGGCTAAACC GGCGATGGAC GGCCCGCAGA TCGCCATGGT GGTGGGGCCA CCGGGGGAAG AGATTTACTG CGACGAATAC GGCCGTATCC GCCTGCAATT TTTATGGGAT CGCTACGGGC AGAGCAATGA CAACAGCTCC TGCTGGATCC GGGTAACCCA GCCGTGGGCG GGCCAGGGCT GGGGCATGCT GGCCATTCCG CGTATTGGCC AGGAAGTGGT GGTGGATTTT CTGCACGGCG ATCCGGATCA ACCGATTGTC ACGGGGCGGA CCTATCACGC CAACAACATC CCGCCGGGGT CGTTACCGGC CAGTAAAACC CAGATGGCGT TCCGCTCAAA AACCCACAAA GGGGAAGGCT ACAACGAAAT GCGCTTCGAG GATGCCAAAG GCGGCGAAGG GCTGTTTATG CATGCGCAGA AAGATATGAC GACCATGGTG CTGAATGATC GCAAAACCGA TGTGACTCAG GACCATTCAG AGCACATTGG GCAAGACCAG TCCGTGACGG TTGTGCGTAA CCAAAGTAAT ACGATCCAAA ATGATCGCCG GGTGGAGGTG ACTCGCGATC AACAAACCGA AGTGGGCAAT GATTACCAGC TAGTGGTGAA AGGTGAAAAG AAAGAGTTTG TGACGAAAAT TCGTTACACC GAAGTGCATG AAGACGAAAC GCTCACGGTG ACGAAAAGTA TTAAAATCCA TGCCAAACAA GGTGATATCA GCATATCAAC CCCGAATGCC GGAATTACGA TCACCCATGA CGGTGCCATT ATTCTGCAAG GGAAATACAT TCGTTTAGCG GCCGATATGA TCGATCTTAA TCCAGAGGAG TAG
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Protein sequence | MFAHDKANNN KAADKTGTVT PTHIVSPEAA PTVSGAQMTE IAGGIGDAVG GTAGKRINQA AEVAKTALDA KAKVLDGGVT PLNLAAGGAG AGLPDSVAAA LTRLVKQPSG LQFTLTAAGL PPQTFAVVDF TLSEMLSSPF VLNVGLASAD PAVDFAAVLD EDATLFIWRE GVLQRSITGM VASFEQGDTG FHQTRYSMVI RPALWRTSLR RNARIFQQAS VEEIITTLLK ENGINDFAFG FRHPHPVREF CVQYQESDFD FIQRLTAEEG IFYYFEFSAG KNTVVYADDV GSLPKGASLP YNPNVAAQAQ ELSITTFTRS AQVRPAMVQL KDYTFKNPNW AAAFSEQSGE LQNQRPDYEH FDFPGRFKDA QHGQDFTRYR LDALRNDANL GQGASNDFTL QPGQLFSLYN HPRSDLNHAW QLLGIQHSGK QMQALEQASG DQGTVLFNHF SFIPHTQTWR PTPLAKPAMD GPQIAMVVGP PGEEIYCDEY GRIRLQFLWD RYGQSNDNSS CWIRVTQPWA GQGWGMLAIP RIGQEVVVDF LHGDPDQPIV TGRTYHANNI PPGSLPASKT QMAFRSKTHK GEGYNEMRFE DAKGGEGLFM HAQKDMTTMV LNDRKTDVTQ DHSEHIGQDQ SVTVVRNQSN TIQNDRRVEV TRDQQTEVGN DYQLVVKGEK KEFVTKIRYT EVHEDETLTV TKSIKIHAKQ GDISISTPNA GITITHDGAI ILQGKYIRLA ADMIDLNPEE
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