| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0251 |
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| Symbol | |
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| ID | 6089317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 292863 |
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| End bp | 293342 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 641595311 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001719017 |
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| Protein GI | 170022512 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTATA TGATTTATTT AACTTTAAAT GGCGAGCAAC AAGGGCTTAT CTCTGCAGGG
TGCTCTTCTG TTGAATCGAT TGGAAACAGA TATCAATCGG GACATGAAGA TCAAATCCAA
GTATTAGGAT TGAATCATAA TATAACAAGA GAACAACATG TATCACATCA CCCGATTAAT
TTTACAAAGC CAATAGATAA GTCATCACCA TTATTAACTG TATCAATATC AAATAATGAG
AAAGTAACTG CCAATTTTGT TTTTTATAGA GTAAATTCAT CTGGCCAAAT GGAAGTATTT
TATGAAGTTA AATTGACCGG GGCTAGTATT ATTGATGTTT CATCGAGTTA TCCCCATTCT
ATAAGTGATA ATGAATCAAT GCCATATGAG CGAGTGCTTC TGAGATATGA CTCTATAACA
GTGGAGCACA AGTTAGCAGG TACTTCAGGT TATAGTATAT GGGATGACCG AGTTTATTAG
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| Protein sequence | MSYMIYLTLN GEQQGLISAG CSSVESIGNR YQSGHEDQIQ VLGLNHNITR EQHVSHHPIN
FTKPIDKSSP LLTVSISNNE KVTANFVFYR VNSSGQMEVF YEVKLTGASI IDVSSSYPHS
ISDNESMPYE RVLLRYDSIT VEHKLAGTSG YSIWDDRVY
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