| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0224 |
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| Symbol | hofQ |
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| ID | 6090010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 261722 |
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| End bp | 263104 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641595284 |
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| Product | putative outer membrane porin HofQ |
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| Protein accession | YP_001718990 |
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| Protein GI | 170022485 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000817003 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGTGC CATCACACAG CCGCTCCTCC AATAGCCATT TATCAGACAG CAAGTTATCA
AACAGTGCTT CATCAAATAG CACTTCATCA AACAGTGTCT TATCAAACAG TGTCTTATCA
AACAGTGTCT TATCAAATAA TGTCTCATCA AGTAATATCT CACCAAATAA TGCCTCATCC
AGTAATGCCT CATTACCGCG TACCCGCAGC GGGGGGCCAG TCACCCTGGA ATTTCAGGAT
GCGCCGGTCT CCGTCATCTT GCAGGCTCTG GCTGACTATC GGCAACTTAA TCTGATCACG
ACTACCGGTG TGGGCGGCAA TCTCAGTTTG CGGTTGATTG AAGTGCCTTG GGAGCAGGCA
TTGGCGATCA TTCTGCGGAT GGGGCGTTTG AAAGCTGAGC GCGAGGGGAC CGTGATGATG
GTCTTTACCG AACAGGAAAT TCAAGAAAGG CAGCAGCGGA CGAAACAACA AGCTGCGCCA
GAAGCACTGG CTAACCTGAC ATTGGCATTG CAATACGCGA ATGCTGAACA GGTGGCTGAC
AGTTTGGATC CGCTGCAAGG TGGGCTGCTT TCTCCAATGG GCAGTGTGGT GGCCGATAAA
CGGACGAACA CATTATTGAT TCGCGATACG CCCGCTTCAC TGGCATTGTT AAAAAACTGG
CTGATTGAGA TGGATTTACC GTTACAACAA GTACAGTTAT CCGCGCATAT TGTGACCATC
AGCAGTGAAG ATTTACAAGA GCTGGGTGTG CGCTGGGGGA TGGGGGAGGG CAAGGGAAAC
ACCGCGCTCA GAATCAATGA TTTTAATGTC AATTTGCCGT TGCCAAATAG CGCCGCGAGC
GTGGGGTTTC ATGTGGCCCG TATTGGTGGC CGCCTGCTGG AGCTTGAGTT GAGTGCGTTG
GAGCAAGAGA ATCAGGTCGA TATTATTGCC AGCCCACGCT TAATTACCTC ACATCAACAA
ACCGCCAGTA TTAAACAAGG TTCTGATATT CCTTATACTG TCTCACGGGG TAAAAAAGAG
GCAGCGGCCA TTGAGTTCAA AGAAGCGGTG TTGGGGATGG AGGTCACACC CAAAATTCTA
CGTAATGGCA AAATCATCCT AGACCTAAAA ATTAGTCAAA ATATGCCCGG TATCACTATT
AAACGCGGTG AGAGTGAAAT GTTGCTAATA GATAAACAAG AAATTAAAAC ACAAGTTACT
GTAAACGATG GCGAAACCAT CGTGCTGGGC GGGATTTTCC AACAAAAAAA ACGCCAGAGT
GTTAATAAAG TCCCGTTACT GGCCGATATT CCACTATTAG GCGCGATGTT CAGGCAAGAT
ACTCAACAGC AAAGTCGGCG GGAGTTAGTG ATTTTCATTA CGCCAAAATT AATCAGTGCC
TGA
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| Protein sequence | MGVPSHSRSS NSHLSDSKLS NSASSNSTSS NSVLSNSVLS NSVLSNNVSS SNISPNNASS
SNASLPRTRS GGPVTLEFQD APVSVILQAL ADYRQLNLIT TTGVGGNLSL RLIEVPWEQA
LAIILRMGRL KAEREGTVMM VFTEQEIQER QQRTKQQAAP EALANLTLAL QYANAEQVAD
SLDPLQGGLL SPMGSVVADK RTNTLLIRDT PASLALLKNW LIEMDLPLQQ VQLSAHIVTI
SSEDLQELGV RWGMGEGKGN TALRINDFNV NLPLPNSAAS VGFHVARIGG RLLELELSAL
EQENQVDIIA SPRLITSHQQ TASIKQGSDI PYTVSRGKKE AAAIEFKEAV LGMEVTPKIL
RNGKIILDLK ISQNMPGITI KRGESEMLLI DKQEIKTQVT VNDGETIVLG GIFQQKKRQS
VNKVPLLADI PLLGAMFRQD TQQQSRRELV IFITPKLISA
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