| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2195 |
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| Symbol | |
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| ID | 6120806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | - |
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| Start bp | 2310288 |
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| End bp | 2314523 |
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| Gene Length | 4236 bp |
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| Protein Length | 1411 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641650133 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001776678 |
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| Protein GI | 170731245 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.989237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGATC TACTCAATCT TTTTAATCAG CAGCGCCAGA CATTGGATTT CGATGCCATC
AAGATTGGCC TTGCCTCGCC TGCCTTGATT AGATCTTGGT CGTTCGGTGA AGTGAAGAAG
CCGGAAACAA TCAACTATCG CACTTTTAAG CCTGAGCGTG ATGGTTTGTT TTGTGCTGCT
ATCTTTGGTC CTATCAAGGA CTATGAATGT TTATGCGGCA AATATAAGCG CATGAAGCAT
CGAGGGGTGG TCTGTGAGAA ATGCGGTACC GAGGTGACTT TAGCCAAAGT ACGCCGTGAG
CGTATGGGTT GCATTGAGCT AGCTTCGCCT GTTGCTCATA TTTGGTTCTT AAAATCGCTA
CCTTCACGCA TTGGATTGAT GCTGGACATG ACTTTACGTG ATATCGAGCG TGTCTTGTAC
TTCGAAGCCT ATGTAGTGAC TGAGCCGGGT CTAACTCCTT TAGAACGGCG TCAGCTCCTA
ACCGAAGAAC AATATTTGCA AGCCCGTCAA GAACATGCTG ATGACTTCGA TGCTTCTATG
GGAGCCGAAG CTGTATACGA ACTCTTGCGA ATGATTGACT TGCAATCGGA AATGGCTCGT
TTGCGTGAGG AAATCGTTGT CACTGGTTCT GAGACTAAGC TGAAACGTTT GACTAAACGT
ATTAAGCTGA TTGAAGCGTT TATCGAATCT GGCAATCGTC CGGAATGGAT GATTTTGACC
GTGTTGCCTG TACTACCCCC AGACCTGCGT CCGCTGGTGC CGTTGGACGG CGGTCGCTTC
GCAACCTCTG ATCTTAATGA CCTGTACCGT CGAGTCATTA ATCGTAACAA TCGTCTGTGC
CGCTTATTGG AGTTAAGTGC TCCTGACATC ATCGTGCGCA ACGAGAAGCG CATGTTGCAA
GAATCAGTCG ACGCGTTGCT AGACAACGGT CGTCGCGGGC GTGCTATTAC TGGTACTAAT
AAGCGTCCCT TAAAATCGTT AGCGGACATG ATTAAGGGGA AACAGGGCCG TTTTCGCCAA
AATTTGCTTG GAAAGCGTGT CGATTACTCT GCTCGTTCAG TGATTATTGT AGGCCCTAAT
CTTCGGTTAC ACCAATGTGG ATTACCGAAA AAAATGGCGC TTGAGCTATT CAAACCTTTT
GTGTTTGCTA AGCTGCAGCG TCGCGGCTTG GCTACTACGA TTAAGGGAGC TAAAAAACTG
GTTGAGCGTG AAGAAGCCGA GGTCTGGGAT ATTCTTGAAG AGGTTATTTT TGAGCATCCT
GTGGTATTGA ATCGTGCGCC AACTTTACAT CGCCAGGGTA TTCAAGCCTT TGAGCCAGTT
TTAATTGAAG GTAAAGCGAT TCAGTTACAT CCGTTAGTTT GTACTGCATT CAATGCAGAT
TTCGATGGCG ATCAGATGGC CGTGCATGTG CCTCTTTCGC TCGAAGCTCA GCTTGAAGCG
CGTGCGTTGA TGATGTCTAC CAACAACATA CTGTCTCCAG CGAATGGTGA GCCGATCATC
GTACCATCAC AGGATGTTGT ACTTGGCTTG TACTACATGA GCCGTGCACT TGAAAATAAG
AAGGGCGAAG GGATGGTGTT CGCCAATACC AGCGAGCTGA AACGTGCCTA CGACAATAGC
GTTGTTGAAT TGCATGCTAA GGTGAAGGTT CGTATTACAG AGATAGAGAC TGATGATCAA
GGGCTGCGTA ACAAGGCTTC TTCGATTGTA GATACTACGG TAGGTCGTGC ATTATTGAGT
GAGATTCTTC CAGAAGGTTT GCCGTTTGTT CTTGTCAATA CCGAAATGAC TAAAAAGAAC
ATTTCGAGGT TGATTAATTC AAGTTATCGC ATGCTTGGCT TGAAGGAAAC CGTTGTATTT
GCAGATAAAT TGATGTACAC GGGTTATGCC TATGCGACAC GTGCCGGTGT GTCAATCTGT
ATTGATGACA TGCTGATTCC TCTCGAAAAG AAAGAAATAT TGGGTGAAGC TGAGCAAGAA
GTGCTCGAGA TTCAGGAGCA GTATCAATCC GGATTGGTTA CCGCTGGCGA GCGTTATAAC
AAAGTGGTTG ATATTTGGTC CCGTACTAAT GAACGGATTG CCAAGGCAAT GATGGATACT
ATCGGCACTG AGAAAGTGGT TAACACCGAT GGTGAAATCG TTGATCAGAA GTCGATGAAT
TCGCTGTATA TCATGGCTGA TTCTGGCGCG CGCGGTAGCC CGCAGCAGAT TCGCCAATTA
GCTGCTATGC GTGGTCTAAT GGTACGTCCT GATGGCTCGA TCATTGAGAC ACCTATCAAA
GCTAACTTTC GTGAAGGTTT GAGTGTTCAG GAATATTTCA ACTCTACGCA TGGTGCTCGT
AAAGGTTTGG CTGATACGGC ATTGAAGACA GCGAACTCTG GTTACCTGAC TCGCCGTTTG
GTTGATGTCA CTCAAGATTT ATGTGTTGTA CAGCTTGATT GCGGCACTGC TGGTGGATTA
ACTATGACCC CGATCGTTGA AGGTGGAGAT GTTGTTGAGC CACTTAAGGA TCGCGTGTTA
GGACGTGTTG TTGCTGAGGA TGTATTGCTG CCTGGTAATG ATGATGAGCC CATTGTAACT
CGTAGCACCT TGCTTGATGA GCAATGGGTA GCTAAGTTGG AAGAGGCCGG TGTGCAGTCA
GTGAAGGTTC GTTCTCCTAT CACATGTGAG TCTCCGTTTG GCGTATGCGC CCTATGCTAT
GGTAGGGATC TTGCTCGTGG TCATTTGGTT AATATGGGTG AAGCAGTAGG TGTCATTGCT
GCTCAATCAA TCGGTGAACC AGGTACGCAG TTGACGATGC GTACCTTCCA TATTGGTGGT
ACCGCGTTGA GTGCAGCAGC GATAGATAAC ATTGCTGTAA AAACTAGCGG TTCGGTAAAA
TTTACTAATC TAAAGTATGT TGAGCATGCC AATGGTACTT TGGTTGCAGT ATCTCGTTCC
GGAGAAATTT CGGTTCTAGA TACTCACGGC CGTGAGCGTG AACGCTACAA GTTACCTTAC
GGTGCGACTA TAAATGTCAA GGATATGGCT GAAGTCAAAT CAGGGCAAAT CTTGGCAAAT
TGGGATCCCC ACAATCACCC AATTGTTTCT GAAGTTGCAG GTTTTGTCCG TTTTATCGAC
TTTGTTGATG GTGTCACTGT CATTGAGAAA ACTGATGATC TGACTGGTTT ATCTTCGCGT
GAGATTGCTG ATCTGAAGCG CCGTGGTTCC CAAGGTAAGG ATCTTCGTCC TTTGGTGCGT
ATCGTTGATA AAAAAGGTAA CGATCTGACT ATTCCCGGTA CTGATCTTTC AGCTCAGTAT
TTGTTGCCTC CGCGTTCGAT TGTTAATCTT CAGGATGGTG CTCCAGTTGG CATCGGTGAT
GTGGTGGCTA AGATTCCACA GGAGGCCTCC AAAACTCGCG ATATCACTGG CGGTTTGCCT
CGGGTGGCGG ATCTGTTCGA AGCGCGTAGG CCGAAAGATC CTGCTATTTT GGCTGAGCGT
TCAGGGGTGA TAAGTTTTGG TAAAGACACC AAAGGTAAGC AGCGATTGAT TATTAAAGAT
GCCGATGGAA GCGAGCACGA AGAGTTGATT CCTAAGTACC GTCAAATCAT TGTGTTCGAG
GGCGAGCATG TCACCAAGGG GGAGACCATT GTGGACGGTG AGCCGAGTCC ACAGGATATT
TTGCGTTTAC TGGGTATCGA GCCGTTAGCT GCTTACTTGG TTAAAGAAAT ACAGGATGTG
TATCGTTTGC AGGGTGTGAA GATCAATGAT AAGCATATTG AAGTCATTAC ACGCCAAATG
TTGCGCAAAG TTGAGATTGT TGATCAGGGA AACAGTAAGT TCCTCAATGG TGAGCAAGTT
GAACGTCAGC GTGTTATCGA TGAAAACGCG AAGTTAATTG CGCGCAATGA ATTACCAGCA
AAGTACAATC CAGTGTTACT AGGTATTACT AAGGCTTCTT TGGCAACGGA ATCGTTCATC
TCGGCAGCTT CTTTCCAAGA AACGACCCGT GTCTTAACTG AGGCTGCGGT ACGAGGGACC
AGGGATAATT TGCGTGGTTT GAAGGAAAAT GTCATCGTTG GTCGCCTTAT TCCGGCTGGT
ACTGGCCAGA CGTATCATAG CCAGCGTCGC TATAGTTCTG TTGGTCTTAC TGAGTCTGAA
ATGGAAACCT TGGTTGGTCG CAGTACCTCA TCTGGTACAG AAATTACTTC GCCTTCCAAG
GATGCGATTC CTCTTGGGAG TAAGGTGGGT TTTTGA
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| Protein sequence | MKDLLNLFNQ QRQTLDFDAI KIGLASPALI RSWSFGEVKK PETINYRTFK PERDGLFCAA
IFGPIKDYEC LCGKYKRMKH RGVVCEKCGT EVTLAKVRRE RMGCIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FEAYVVTEPG LTPLERRQLL TEEQYLQARQ EHADDFDASM
GAEAVYELLR MIDLQSEMAR LREEIVVTGS ETKLKRLTKR IKLIEAFIES GNRPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLC RLLELSAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGTN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS ARSVIIVGPN
LRLHQCGLPK KMALELFKPF VFAKLQRRGL ATTIKGAKKL VEREEAEVWD ILEEVIFEHP
VVLNRAPTLH RQGIQAFEPV LIEGKAIQLH PLVCTAFNAD FDGDQMAVHV PLSLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMSRALENK KGEGMVFANT SELKRAYDNS
VVELHAKVKV RITEIETDDQ GLRNKASSIV DTTVGRALLS EILPEGLPFV LVNTEMTKKN
ISRLINSSYR MLGLKETVVF ADKLMYTGYA YATRAGVSIC IDDMLIPLEK KEILGEAEQE
VLEIQEQYQS GLVTAGERYN KVVDIWSRTN ERIAKAMMDT IGTEKVVNTD GEIVDQKSMN
SLYIMADSGA RGSPQQIRQL AAMRGLMVRP DGSIIETPIK ANFREGLSVQ EYFNSTHGAR
KGLADTALKT ANSGYLTRRL VDVTQDLCVV QLDCGTAGGL TMTPIVEGGD VVEPLKDRVL
GRVVAEDVLL PGNDDEPIVT RSTLLDEQWV AKLEEAGVQS VKVRSPITCE SPFGVCALCY
GRDLARGHLV NMGEAVGVIA AQSIGEPGTQ LTMRTFHIGG TALSAAAIDN IAVKTSGSVK
FTNLKYVEHA NGTLVAVSRS GEISVLDTHG RERERYKLPY GATINVKDMA EVKSGQILAN
WDPHNHPIVS EVAGFVRFID FVDGVTVIEK TDDLTGLSSR EIADLKRRGS QGKDLRPLVR
IVDKKGNDLT IPGTDLSAQY LLPPRSIVNL QDGAPVGIGD VVAKIPQEAS KTRDITGGLP
RVADLFEARR PKDPAILAER SGVISFGKDT KGKQRLIIKD ADGSEHEELI PKYRQIIVFE
GEHVTKGETI VDGEPSPQDI LRLLGIEPLA AYLVKEIQDV YRLQGVKIND KHIEVITRQM
LRKVEIVDQG NSKFLNGEQV ERQRVIDENA KLIARNELPA KYNPVLLGIT KASLATESFI
SAASFQETTR VLTEAAVRGT RDNLRGLKEN VIVGRLIPAG TGQTYHSQRR YSSVGLTESE
METLVGRSTS SGTEITSPSK DAIPLGSKVG F
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