Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_2004 |
Symbol | |
ID | 6121088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 2089280 |
End bp | 2091955 |
Gene Length | 2676 bp |
Protein Length | 891 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641649956 |
Product | beta-mannosidase precursor |
Protein accession | YP_001776504 |
Protein GI | 170731071 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000805644 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCACGCC ACCGACACAT CTGCCTCCGC CTGGCCGCCT TCCCCCTGCT CGCCTTTGGC ACCCTCCTCA CTGCCTCGGC CGCCCCACCC AGCAGCCACC CCCTCAGCAA CTGGCACCTC CGCCTCGCCC CTGACCAACC CACAACACAC ACCCTCCCCT TAAAAACAAC CACCTGGCTA CCCGCACACG TCCCCGGCAC CGTACAAACC GACCTCATCG CCGCTGGCAT CGTCCCCGAC CCCTTCTACC GTGACCAAGA AGCACAGATT CAATGGATCG GCCTCAACGA CTGGCAATAC CGAACCCATT TCCACATCGA CACCGCCACA CTGACCCGCC AACATATCGA ACTCGTCTTC AACGGCATCG ACACCCTCGC CACCGTCACC CTCAACGGCA CCCCCCTCCT CCATCCCAAC AACATGTTCC GGCGCTGGCG CGTGGACGCA AAACCACTGC TCAAACGCGG TAAAAATATC CTGGAAATAA CCCTCTACTC ACCCATCAAA AAGATTCAAC CCTGGCTCAC ACAACAACCC TATGCCCTCC CCGGCGCCTA CGACTCCGCC TTCCACGACG AACCAACCGC ACGCCACAGC GCCACCTACG TACGCAAAGC ACCCTACCAA TTCGGCTGGG ACTGGGGACC GCGCATCGTC ACCACCGGCC TCTGGAAAAA CGTCACCCTG GACACCTGGG ACACCACCCG CATCAATGAC CTGCACATCG CCCAACAACG CGTCGACGCC GACACCGCAC ACCTAGAAGC ACAACTCACC CTAGATGCAA CGCATCGCGG CCCCGCCCAC ATCACCCTGC AAATCTTTGA CCCAGACGGC CGCCCAATCG CCCAATACCG CCAACACCCC ACCCTCGACA CCGGCACCAA CCACATCCAC CTCCCCGTGC GGATTGCCCA ACCGCGGCGC TGGTTCCCCG TCGGCTACGG CACCCCAGAC CGCTACACCT TTAAAGCCAC CGTCCGCGAT GCCGCCGGCA CCATCCAACA CATCGAACGC ATCACCGGCT TACGCACCAT CACCCTGCGT CGCGAACCGG ACCAATGGGG AAAAAGCATG ACCCTCGTGG TCAACGGCAT TCCGATCTTC GCCAAAGGCG CCAACCTCAT CCCATTCGAC AGCATCCCCA GCCGCGTGAC CGAAGCGACC ATCCGCCGCA CCCTCCAAGA CGCCCACACA GCCAATATGA ACATGCTCCG CGTCTGGGGC GGCGGCCACT ATCAAGACGA ACACTTCTAC GCCCTGGCCG ACGCACTGGG CATCATGATT TGGCAAGATT TCATGTTCGG CGGAGCCATC CCCCCCGACG ACGTGGACTT CCGCGAAAAC GTCCGCCAAG AAGCCATCGA ACAACTCACC CGACTCCGCG ACCACCCCAG CATTGTCCTG TGGTGCGGCA ACAACGAAGT ACAGACCGGC TGGGAACATT GGGGCGACCG CATCACCTTC AAACAATCCC TGCCCCCTGA AGAACGCAGC AAAATAGAGC GCGGCATAAC CACCCTGTTC GGCAGCGTCC TGCGCGAAGC CGTCCACCTC TACTCCCCTA GCACCCCATA CTGGGCCACC TCCCCCGGCA CCGACCTCGA CGGCCCAGCA GACCAAACCA ACGACGGCGA CATGCACTAC TGGAAAGTCT GGGGCAACCC CGCACTCCCA GTCACCGAAT ACCTCAATAT CACCCCGCGC TTCATGTCCG AATATGGCCT GCAATCCTTT CCGGATATAC GCACCATCCG CACATTCACC CGCCCAGAAG ACCTCTCCCT CACATCCCAA GTGATGCGTG CCCACCAAAA ATTTGACAAC GGCAACGGCA ACCAACGCCT TCTGCTGTAC ATCCGTCGTA CATTCGGCGA ACCCAAAGAT TTCGAAAGCT TCATCTACCT GAGCCAACTG ATGCAGGCCG AAGGCATTGC CATTGCCGCC CAACACCTGC GTGCCGCACG GCCACAGACC ATGGGATCCC TCTACTGGCA ACTTAACGAT GTCTGGCCCG GCGCCTCCTG GTCCAGCATT GATTACGCAG GACGTTGGAA AGTCCTGCAC TACTACGCAC GCCGCTTCTA CGCCCCCCTC ATGATCACCG CACTCCGTAA AGACGGCATG ACCGCCGTCT CCCTCGTTTC CGACCACACC ACACCCCTGC ACGTCCATTG GCGCCTGCGC GTCCTAGACA TGGACGGCAC ACCACACCAC ACCGACGACC AACACACCAC ACTGCCCCCC TTGAGCAGCC TCCAAGTCGC ACACTACAGC GACGCACAAC TCCTCGGCCA CGCCGACCCC ACACACACCG TTGCCGTGTT TGAACTCCTG GATGGCAACA CCCTCCTATC ACGTCAAACC CTTCTTTTCG ACGCCGCCAA ACACCTAAAA CTCCCCCAGA CCCACATCCA CAACGCTTGG AAGACAGACC ACGGCATGTC TCTACTCACC CTGACCAGCC CGACCCTGGC ACGCAACGTC TGGCTATCAT TTGGAGATAT TGATGCACAA CTTTCCGATA ACGCCTTCGA CCTCCTCCCC GGAGAACCCC TGACCATCCA TATCCGCAGC ACCGCCCCAC TGACACAACT CCAACACGCC CTGCACATCC GTGACCTGGC CGCAACCCTG GCCGGTGCCC CACCCGAACC CGAAACAGCC CAGTGA
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Protein sequence | MPRHRHICLR LAAFPLLAFG TLLTASAAPP SSHPLSNWHL RLAPDQPTTH TLPLKTTTWL PAHVPGTVQT DLIAAGIVPD PFYRDQEAQI QWIGLNDWQY RTHFHIDTAT LTRQHIELVF NGIDTLATVT LNGTPLLHPN NMFRRWRVDA KPLLKRGKNI LEITLYSPIK KIQPWLTQQP YALPGAYDSA FHDEPTARHS ATYVRKAPYQ FGWDWGPRIV TTGLWKNVTL DTWDTTRIND LHIAQQRVDA DTAHLEAQLT LDATHRGPAH ITLQIFDPDG RPIAQYRQHP TLDTGTNHIH LPVRIAQPRR WFPVGYGTPD RYTFKATVRD AAGTIQHIER ITGLRTITLR REPDQWGKSM TLVVNGIPIF AKGANLIPFD SIPSRVTEAT IRRTLQDAHT ANMNMLRVWG GGHYQDEHFY ALADALGIMI WQDFMFGGAI PPDDVDFREN VRQEAIEQLT RLRDHPSIVL WCGNNEVQTG WEHWGDRITF KQSLPPEERS KIERGITTLF GSVLREAVHL YSPSTPYWAT SPGTDLDGPA DQTNDGDMHY WKVWGNPALP VTEYLNITPR FMSEYGLQSF PDIRTIRTFT RPEDLSLTSQ VMRAHQKFDN GNGNQRLLLY IRRTFGEPKD FESFIYLSQL MQAEGIAIAA QHLRAARPQT MGSLYWQLND VWPGASWSSI DYAGRWKVLH YYARRFYAPL MITALRKDGM TAVSLVSDHT TPLHVHWRLR VLDMDGTPHH TDDQHTTLPP LSSLQVAHYS DAQLLGHADP THTVAVFELL DGNTLLSRQT LLFDAAKHLK LPQTHIHNAW KTDHGMSLLT LTSPTLARNV WLSFGDIDAQ LSDNAFDLLP GEPLTIHIRS TAPLTQLQHA LHIRDLAATL AGAPPEPETA Q
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