| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1929 |
|---|
| Symbol | def |
|---|
| ID | 6120209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 2008068 |
|---|
| End bp | 2008580 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641649884 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001776433 |
|---|
| Protein GI | 170731000 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTAT TGCCGATTCT TGAGTTTCCT GATCCTCGCC TGCGGACCAA GGCGGTGCGT
GTGGGGGTTG CCGAGGTGGT TTCATCGTCG TTCCAGACTC TGCTTGATGA CATGTTCGAG
ACGATGTATG CCGCCCCTGG TATTGGCTTG GCGGCGACTC AAGTGAATGT GCATCAACGC
TTTATGGTGG TTGATGTCAG CGAGGAAAAA AATGCGCCTA TGGTCTTTAT TAATCCGGAG
ATCGTCACCA GGGAGGGCGA TCAGGTGTTT CAGGAAGGCT GTTTATCAGT GCCTGGAATC
CATGCCGATG TGACCCGTGC TCTTAGCATT GTGGTGCGCT TTCTGGACCG CCACGGCGAC
GAACAACAGC TCACCGCTGA GGGGCTGTTG GCGGTATGTA TCCAGCATGA GATGGACCAT
CTGGATGGCA AGCTTTTCAT TGATTATCTC TCTCCTCTCA AGCGTGACAT GGTGCGTAGG
AAGCTTGAGA AGCAGCGTCG GCGCGCCTCC TGA
|
|---|
| Protein sequence | MALLPILEFP DPRLRTKAVR VGVAEVVSSS FQTLLDDMFE TMYAAPGIGL AATQVNVHQR
FMVVDVSEEK NAPMVFINPE IVTREGDQVF QEGCLSVPGI HADVTRALSI VVRFLDRHGD
EQQLTAEGLL AVCIQHEMDH LDGKLFIDYL SPLKRDMVRR KLEKQRRRAS
|
|---|
| |