Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_1648 |
Symbol | |
ID | 6121607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 1722400 |
End bp | 1725222 |
Gene Length | 2823 bp |
Protein Length | 940 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641649633 |
Product | hemolysin-type calcium binding protein |
Protein accession | YP_001776187 |
Protein GI | 170730754 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATA ATACGGAAGA TACAGGTAAA GCAACATCTC ATCAGATTGA TTACAGCACT TTCAATCAGT TGAGCGCCTC ATATACCGCT GGGGTTTTTG CCTTTACGCA AGAATATGAA AGGCACTATT CCATACTGAT TCGGAATATG GACCAGCAAG CAGCCACCAT TCAAGCTCTG CAGGCTGCAC ATCAACGTCA AGCTGATTTA TATTGGAGGT ATTCTAATAG AGCCGATCTT GCTGGAAATG CTACCTTGAG GGATATGTAT GCCGAGGTGG CTCGGGGAGC GGCTTTCCGT GTGCATGATT TATCCGTGGC GCAAGATGGG GCCACACAGG TGCTGAATTC ATATTATTCT CAGGCGCAAT CACGATTTGC GTCATTAATC AAAACTAATC CAGCACTGCG ATTTGTTGGG AAATATGGCG GACCTATAGC TGATGTGGCG AGTGTCGGTG TTGCGATTAA ATTTGGCGGT CCCGGTGATA TCGCAAAGTC GATCGGTATG ATTGCTATCG GATTAACTGC TGGGTATTTA TTCGGGGCTT TGATAGGAGT GGCTGGACTT GGTGCTGCGG TTGCAGCTGG TTTAGTTGCT GCTGGTGTAG CATACATTAG CGATCAATAC ATACCTCAGG AATGGTGGGA AAGCATCGAG AATAAAAGCA AAGAAACATT CAAAGATCTC TTTGATCAAA TCCGCCGTTT CACCCCGCGT CGCGACCCAC TAGTCCTGGA CCTGGATGGC GACGGCATCG AAACCGTGGC CGCGGGTAAA CATATCCTGT TTGATCACGA CGGCGACGGC ATTAAACACG CCAGCGGCTG GGTGAAGCCC GATGACGGCT TTTTGGTGTT GGACCGCAAC GGCAACGGCC GCATTGATGA CGGGAGTGAA CTGTTCGGTG CCGATACCAT CTTAGCCAAC GGTCACAAAG CCACCTCCGG TTTTGAGGCA CTGCGTGATC TAGATAGTAA CGGTGATGGC CTCTTCGATG CCGCCGATGC CCGCTTTGCG GACGTGCGCG TCTGGCGCGA TCTTAATCAG GATGGCCAAT CCCAGGCCAA CGAGCTGTTC ACCCTCTCCA GCCTAGGCAT TGCCTCCATC ACGCTGACCC CCACCAACAC AGAGGATGTG GACTTAGGCA ACGGTAACCT GATTGACAAC CGCGGCACCT ACACCCGTAC CGATGGCCGT ACCGGCGTGG TCGGCGACCT GCAATTAGGT CTTGAGCACT TCTACCGCGA TTACAGCGGC GCTAAAGAGC AGGTGACCGT CACGGATGCC GCTGCGGCCT TGCCACATTT GACAGGCAGC GGTGCGGTGC GTGATCTGAG AGAGGCCGCC AGCCTATCGC CCGCCTTATT GGCGGCTGTT CAGGCGTTGA CACCCGGCAC TACCCGCGAC ACCATGCGCA TCGCGTTGGA TCCGCTTGTC GCCCTCTGGG CCGGCACTTC GACCATGCCC AGCACCGAGG AGCGCTTGGA GACTTCCGGA GCTGTCACCC GCACCGTCTA TTACCATGGT GTTGTGCCCT ATACCGTGAC TGCACAGGGG AAGGAGGCCG TTCTGGCCTG GACCAAAGAG CAGCATGCCC AACTCGGGCC GATCATCGCC ATTCTGGAGA AATTCAACGG CTCCAGCTTG GTCAGCGAAC GCAATGGCCA GGTGTCCACA GGGGGCGAAA CCTTCACCTG GAACCGTGTC ATCCATCCTG ACGGACACAG CGAAGACGTG ATGAGCATCC TGCTCCAGCC AGAGCAGATC AATAGCTTGA TGAGCGCCTA CGCCAGCTTG AAAGAATCTG CCTATGCCGG ACTGGTTCTC GGCACCCGGT TGAGTGATTA CCTGTCTGGA CTCACCCTGA CCTACAGCAA TGATGCCTTT GGATGGGATG CGTCCGCCCT AGAGGCCAAG CTAGATCACA CCTGGCAGCG CAACAAAACC CAGGCGCTTC AGGATGTCAT GGACCTGTAC CGCTATGGCA GTAACGCCGT GGCGGCTAGC GGCTGGAAAC CCTTCGATGC CTTACGCCAC ATGATCGACC GGGCCGCAGC AACACCTGAT GGGAGGCAAG CGCTGGCGGC TGCGGAGATC ACCCTAGTTT CTGGAAGTGC CGAAGGCAGT GCCGCCGCGG ACCTGATGTT TGGCGATACA GGGGCTAATA TTCTGCGAGG CGGCGCGGGC GATGATGTGC TCTCCGGCGG TGATGGAGAT GACACGCTGT ACGGTGGCGA TGGCAACGAC ATCCTCCACG GCGATGCGGG TAACGACACC CTCTACGGTG GCGGCGGCAA TGATCTGCTG CTGGGCGGTG CTGGCGATGA CGTCCTAGAC GGCGGCGAAG GCAGCAACCG CCTAGACGGC GGCGCCGGTA ACGATGTACT GAAAGTGTCG TATTGGTCCG CAGATAACGT GCTGAACGGC GGCACCGGTG ATGACACGTT GTATGGCAGC GGTTACGCGG ACACATACAT ATTTAATAAG GGAGACGGTC ACGACACGAT CATTGAGCAA GGCGGTACTG ACAAGCTGGT GTTTGGTGAG GGGCTGCATC AGAAAGACGC CCGCTTTACG AAATCAGGAA ACGATCTGTC TATTCTCTTG AATAGTGGGG TGGATCAGGT GACTGTGGCG GGTTGGTTCA GTGCGGCGGC GCATCAGGTG GAATCGTTGG TGTTCCAGGA TGGGACGGTG CTGTCCGGTG AGGTGGAGCG TTTGATTGCG GCGATGGCGC TGTCCCCTGC GGTGACGACG ATGCAAGCCA GTGTGCGTGA TACCAAGGAG TTACATAGGC TGGTGGCCAG TTCGATTGTC TAA
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Protein sequence | MSNNTEDTGK ATSHQIDYST FNQLSASYTA GVFAFTQEYE RHYSILIRNM DQQAATIQAL QAAHQRQADL YWRYSNRADL AGNATLRDMY AEVARGAAFR VHDLSVAQDG ATQVLNSYYS QAQSRFASLI KTNPALRFVG KYGGPIADVA SVGVAIKFGG PGDIAKSIGM IAIGLTAGYL FGALIGVAGL GAAVAAGLVA AGVAYISDQY IPQEWWESIE NKSKETFKDL FDQIRRFTPR RDPLVLDLDG DGIETVAAGK HILFDHDGDG IKHASGWVKP DDGFLVLDRN GNGRIDDGSE LFGADTILAN GHKATSGFEA LRDLDSNGDG LFDAADARFA DVRVWRDLNQ DGQSQANELF TLSSLGIASI TLTPTNTEDV DLGNGNLIDN RGTYTRTDGR TGVVGDLQLG LEHFYRDYSG AKEQVTVTDA AAALPHLTGS GAVRDLREAA SLSPALLAAV QALTPGTTRD TMRIALDPLV ALWAGTSTMP STEERLETSG AVTRTVYYHG VVPYTVTAQG KEAVLAWTKE QHAQLGPIIA ILEKFNGSSL VSERNGQVST GGETFTWNRV IHPDGHSEDV MSILLQPEQI NSLMSAYASL KESAYAGLVL GTRLSDYLSG LTLTYSNDAF GWDASALEAK LDHTWQRNKT QALQDVMDLY RYGSNAVAAS GWKPFDALRH MIDRAAATPD GRQALAAAEI TLVSGSAEGS AAADLMFGDT GANILRGGAG DDVLSGGDGD DTLYGGDGND ILHGDAGNDT LYGGGGNDLL LGGAGDDVLD GGEGSNRLDG GAGNDVLKVS YWSADNVLNG GTGDDTLYGS GYADTYIFNK GDGHDTIIEQ GGTDKLVFGE GLHQKDARFT KSGNDLSILL NSGVDQVTVA GWFSAAAHQV ESLVFQDGTV LSGEVERLIA AMALSPAVTT MQASVRDTKE LHRLVASSIV
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