Gene Xfasm12_1438 details

Gene Information

• Locus tag: Xfasm12_1438
• ID: 6121301
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 1502486
• End bp: 1503106
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641649435
• Product: RNA polymerase sigma factor RpoE
• Protein accession: YP_001775991
• Protein GI: 170730558
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 0.389052
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGAAA CAAAACAACC TCAGTCCCTA GATATCGAAT TGGTTCGGCG CGTGCAGTGC 
GGCGAATACG CTGCATTCGA TACCTTAGTA CGCAAATACC AACATCGAGT CATTGCCCTG 
ATCGGACGCT ACATCGCCGA TTGGAGTGAA TGTCAGGACG TAGCCCAGGA AACATTTGTA 
CGCGCCTATC GTGGGATCTG CAATTTTCGC GGCGATGCTC AGTTTTCGAC CTGGTTACAT 
CGTATCGCCG TGAATACCGC CAAGAACCAC CTCGCCGCAC GCAACCGTTC CCGGCTGAGC 
AATGAGGCCG AAATTGAAGA GGCTGAACAG TTTAATCACA GCTCGCACTT AAGTGACACC 
AACACACCAG AACGAGAACT CATGCGCCAG GAGTTGGAAC AAATCGTGAT GAGCGCGGTC 
CAAGCACTGC CTGAAGAATT TAGAACTGCC TTTACTCTGT GCGAGATGGA AGGGTTGAGC 
TACCAAGAGA TCGCACAACG GATGGATTGC CCAATCGGAA CCGTACGTTC ACGTATTTTC 
CGGGCGCGCG AAGCGATAGA CATAGAATTA CGACCTTTTC TAGAGATCAA CAACATTACC 
CGCAAACGAT ATCGTGTATG A 

 

Protein sequence

MAETKQPQSL DIELVRRVQC GEYAAFDTLV RKYQHRVIAL IGRYIADWSE CQDVAQETFV 
RAYRGICNFR GDAQFSTWLH RIAVNTAKNH LAARNRSRLS NEAEIEEAEQ FNHSSHLSDT 
NTPERELMRQ ELEQIVMSAV QALPEEFRTA FTLCEMEGLS YQEIAQRMDC PIGTVRSRIF 
RAREAIDIEL RPFLEINNIT RKRYRV