Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_1368 |
Symbol | |
ID | 6119889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 1423279 |
End bp | 1425597 |
Gene Length | 2319 bp |
Protein Length | 772 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641649372 |
Product | transcription-related protein |
Protein accession | YP_001775928 |
Protein GI | 170730495 |
COG category | [K] Transcription |
COG ID | [COG2183] Transcriptional accessory protein |
TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAAACA GCCTCCTCAC CCAGCATATT GCTCAGATCA TTGCCACTGA GATCTCCTCA CAGCCCACCC AAGCCCGCGC AGCCATCGCC TTGCTTGATG AGGGCGCAAG CGTCCCCTTC ATCGCACGCT ACCGTAAAGA AGCCACCGGC GGCCTGGATG ACACCCAATT ACGCACCCTC GAAACCCGAT TAACCTACCT ACGCGAACTG GAAGAACGCC GCTCAGCCAT CCTCGCCAGC ATCACCGAAC AAGGCAAACT GAACGACCTC ATACACGCCG AGATCCTCGC TGCCGACACC AAATCGCGTT TGGAGGACCT CTATCTCACA TACAAACCCA AGCGCCGCAC CCGCGCACAG ATCGCACGCG AAGCAGGCTT AGAACCATTA GCCGATAGCC TACTGACTGA CCCCACACTG ATTCCAGAGA CCGTTGCCGC CAACTTTGTC GACCCTGAGA AAGGGATCAC CGACATCAAA ACCGCACTTG AAGGCGCACG TGTAATCCTG ATAGAGCGCT GGGGAGAAGA TGCCGCTCTG ATCGGTGAAC TACGTCAATG GCTCGCCAAC AATGGAGTGA TTCATGCACG CCTCATCGAC AACAAAGAAG ACACTGGAGC CAAATACAGA GACTACTTCA ACCATACCGA ACTGCTCTCC AAAATTCCCT CACACCGCCT GCTCGCATTG TTCCGCGCCC GCTCTGAAGA AATACTGCAT TTAGACCTAG ATCCCGGTAA TGATGTTGAC GCTGGCCATC AATACTGTGA AAGCATGGTC ATGCAGGCCA CATGTGTCGC TGACCAAGGG CGCCCAGCGG ATACATGGTT AATGACCGCC TGCCGCCTCA CCTGGCGTGC CAAACTTCAT ATGCATTTGA TGTTGGACCT CTTCAACCAA GCACGAGAAA AAGCCGAAGC AGAAGCAATC ACTGTATTCA GCAATAACCT CAAAGATCTC CTGCTAGCCG CACCGGCTGG ACCACGCATC GTTCTGGGGA TTGATCCAGG CATCCGCACC GGCTGCAAAA TCGCTATCGT CGACACCACC GGCAAACTGA TCGCAACAGA AACAATCTAC CCGCACGAGC CGCGGCGCGA GTGGGACAAA TCACTACACA CCCTAAAGAC ACTCTGCACC CAACATCACG TCACACTGAT TGCCATTGGC AATGGCACCG CAAGCCGCGA GACCGACAAA CTAGTAAGCG ACCTGATCAA AGCGCATCCT GCATTGAAAC TGCAAAAAAT CGTTGTCAGC GAATCAGGAG CCTCCGTCTA TTCGGCCTCC GAATCCGCCG CTAAAGAATT CCCCAACCTG GATGTCTCCT TACGCGGCGC CGTCTCGATT GCACGCCGCC TCCAAGATCC GCTAGCTGAA CTAGTTAAAA TCGACCCCAA AGCAATCGGA GTTGGGCAAT ACCAACACGA CGTCGACCAA CTTCACCTCG CCAAAGCCCT GGATGCACGT GTAGAAGACT GCGTCAATGC CGTTGGAGTC TATGTCAACA CAGCATCCGC AGCATTGCTA TCGCGCGTAT CCGGCCTATC TGCGAGCGTC GCCGAAAACA TCACTCGCTA TCGCGACGAA CACGGATCAT TCAAACAACG CCAAGACCTG CTGAAAGTAC CCAGACTCGG CGCAAAGACC TTTGAACAAT GCGCCGGATT CCTTCGTATT GCTGACAGCA ACCAACCTCT GGACGCCTCT GCAGTACATC CAGAAGCCTA CCCGGTCGTC GAACGCATTG TGCAAACCAC AGGCAAACCA ATCAAAGCAT TGATTGGCGA TAGCCACACC TTACGCATGC TCAAACCAGA ACAATTCACT GACACGAACT TCGGAATACC AACCATCCGC GACATCATCA AAGAACTAGA AAAACCAGGC CGCGACCCAC GTCCAGAATT CAAAGCTGTG CGATTTACAG AAGGCGTAGA AAACATCAAA GACCTCAAAC CAGGCATGAT CCTCGAAGGA GTCGTTAGCA ACGTCGCCGC ATTTGGTGCC TTCGTCGATA TTGGAGTACA CCAAGACGGA TTAATTCACA TATCAGCCCT AGCGGACCGC TTCGTCAAAG ACCCACGTGA CATTGTCAAA GCGGGCGACA TTGTCAAAGT CAAAGTTTTG GAGATTGATT TACCACGCAA ACGTATCGCA CTGACCTGCC GCCTCCATGA AGAAACACCA CCAGAAACCC CAGCAGCGAA TAGAACTGGC AATGAACGCG GCAGACCCAA CCCCGTTGCA AAAAAACTCA AAGCCACACC AACCGACAAC ACACTCGCAC AAGCCTTCGC ACGTGCACGA CTCAAATGA
|
Protein sequence | MQNSLLTQHI AQIIATEISS QPTQARAAIA LLDEGASVPF IARYRKEATG GLDDTQLRTL ETRLTYLREL EERRSAILAS ITEQGKLNDL IHAEILAADT KSRLEDLYLT YKPKRRTRAQ IAREAGLEPL ADSLLTDPTL IPETVAANFV DPEKGITDIK TALEGARVIL IERWGEDAAL IGELRQWLAN NGVIHARLID NKEDTGAKYR DYFNHTELLS KIPSHRLLAL FRARSEEILH LDLDPGNDVD AGHQYCESMV MQATCVADQG RPADTWLMTA CRLTWRAKLH MHLMLDLFNQ AREKAEAEAI TVFSNNLKDL LLAAPAGPRI VLGIDPGIRT GCKIAIVDTT GKLIATETIY PHEPRREWDK SLHTLKTLCT QHHVTLIAIG NGTASRETDK LVSDLIKAHP ALKLQKIVVS ESGASVYSAS ESAAKEFPNL DVSLRGAVSI ARRLQDPLAE LVKIDPKAIG VGQYQHDVDQ LHLAKALDAR VEDCVNAVGV YVNTASAALL SRVSGLSASV AENITRYRDE HGSFKQRQDL LKVPRLGAKT FEQCAGFLRI ADSNQPLDAS AVHPEAYPVV ERIVQTTGKP IKALIGDSHT LRMLKPEQFT DTNFGIPTIR DIIKELEKPG RDPRPEFKAV RFTEGVENIK DLKPGMILEG VVSNVAAFGA FVDIGVHQDG LIHISALADR FVKDPRDIVK AGDIVKVKVL EIDLPRKRIA LTCRLHEETP PETPAANRTG NERGRPNPVA KKLKATPTDN TLAQAFARAR LK
|
| |