| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0871 |
|---|
| Symbol | |
|---|
| ID | 6120730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 944820 |
|---|
| End bp | 945755 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641648922 |
|---|
| Product | oxidative stress transcriptional regulator |
|---|
| Protein accession | YP_001775487 |
|---|
| Protein GI | 170730054 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0000180312 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGC GTGACTTGAA ATATCTAATT GCTCTGGCCG ATTACAAGCA CTTTGGCCGT
GCTGCAACTG CATGTTTTGT CAGTCAGCCG ACGCTATCTA CGCAAATCAA GAAGTTGGAA
GGCGAGCTCG GCGTGTCGTT AGTCGAGCGT GCGCCGCGTA AGGTCATGAT GACCCCGGCT
GGGCGCGAAG CGGCGATCCG TGCGCGTAGC ATTGTTGCCG AGGTTGAGGA AATGAAGGAA
GCTGCGCGGC GTAGCCGTGA TCCGGAGGCT GGTGCTGTGC GTTTGGGTAT TTTCCCAACG
CTCGGTCCGT ATTTGTTGCC CCACGTAGTA CCGAGTATCC GTTATCGTTT TCCACAATTG
GAACTGTTGC TGGTTGAGGA GAAAAGTGAC GAATTGCTCG CACAGTTGCG TGAAGGTAAG
TTGGATGCAG CGTTGTTGGC ATTGCCGTTA CATGATGAAC AATTGCACAC CGAATTTTTG
TTTGAGGAGC CGTTCGTGTT GGCAGTCCCA GAGGGGCATC CGTTGGCTAC ACGTCGTGAG
ATGACGATGG AAGAATTAGC CGACGAACGT TTGTTGTTAC TGCAAGATGG CCACTGTCTG
CGTGAGCAGG CATTAGATGT GTGCCATATG ACTGGTGCAT CGGAGAAGTC GGAGTTTCAG
GCTACGAGCT TGGAGACTTT GCGACAGATG GTGGTTGCTA ATGTGGGTAT CACGCTGCTG
CCGTTGCTCT CAGTCAAGCC GCCGGTAGTC TGTTCGGAAA GTATTCGTCT GATTAATTTT
CCTTTGGACA AACAGCCGAG TCGCCGAATC GCTATGGTGT GGCGACGCAG TTCAGCGATG
ACGACATTTC TAGAGAGGTT TTCGAGCATG TTCAAGGAAT TGCCAAAGGA GTTGTTTGAC
TTGCCTCAGA CTGTGGTGCT GTACAAAGGT CGGTAG
|
|---|
| Protein sequence | MNLRDLKYLI ALADYKHFGR AATACFVSQP TLSTQIKKLE GELGVSLVER APRKVMMTPA
GREAAIRARS IVAEVEEMKE AARRSRDPEA GAVRLGIFPT LGPYLLPHVV PSIRYRFPQL
ELLLVEEKSD ELLAQLREGK LDAALLALPL HDEQLHTEFL FEEPFVLAVP EGHPLATRRE
MTMEELADER LLLLQDGHCL REQALDVCHM TGASEKSEFQ ATSLETLRQM VVANVGITLL
PLLSVKPPVV CSESIRLINF PLDKQPSRRI AMVWRRSSAM TTFLERFSSM FKELPKELFD
LPQTVVLYKG R
|
|---|
| |