Gene Xfasm12_0517 details

Gene Information

• Locus tag: Xfasm12_0517
• Symbol: rpsD
• ID: 6120920
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 559704
• End bp: 560330
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 641648586
• Product: 30S ribosomal protein S4
• Protein accession: YP_001775156
• Protein GI: 170729723
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCGTT ATATCGGCCC TAGTTGTAAG CTTGCGCGCC GCGAAGGCGC CGACTTATCC 
TTAAAGAGTC CATCTCGTGC TTTAGATTCT AAGTGTAAAT TGGAACAGAG GCCTGGTCAG 
CACGGTGCTG TACGAAAGTC TAAATTGTCT GATTACGCTT CTCAATTGCG CGAGAAACAA 
AAAGTTAAGC GTATTTATGG TGTTTTGGAG CGTCAGTTCC GTAATTATTA TAAAAATGCT 
TCTACTAAAA AAGGTAACAC TGGGGAGAAT TTGCTTCAGT TATTGGAAAC TCGTTTGGAT 
AATGTTATTT ACCGCATGGG TTTTGCTGTT ACACGTCCTG CTGCTCGTCA GTTGGTCTCT 
CACCGTGGTG TGTTGGTCAA TGGGAAGATA GTAAATTTGC CTTCGTATCA TGTTAAGCCT 
GGTGATATAG TTGCTCTCTC TCAGAGAGCA CAAAAGTATT TGTGTGTTCA AGAGTCGTTG 
ACTATAAAAG ATCAGCATGG TTCCGCTTTT TCCTGGGTTG AGGTTGACTC TGAAAAGTTC 
AGTGGTGTCT TTAAGGCTCT TCCGGATCGT GCTGACTTAC CTTCGGATAT CAATGAAGCT 
TTGATCGTAG AGTTGTATTC AAAATAA 

 

Protein sequence

MARYIGPSCK LARREGADLS LKSPSRALDS KCKLEQRPGQ HGAVRKSKLS DYASQLREKQ 
KVKRIYGVLE RQFRNYYKNA STKKGNTGEN LLQLLETRLD NVIYRMGFAV TRPAARQLVS 
HRGVLVNGKI VNLPSYHVKP GDIVALSQRA QKYLCVQESL TIKDQHGSAF SWVEVDSEKF 
SGVFKALPDR ADLPSDINEA LIVELYSK