Gene Xfasm12_0494 details

Gene Information

• Locus tag: Xfasm12_0494
• Symbol: rplC
• ID: 6120897
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 548260
• End bp: 548907
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 641648563
• Product: 50S ribosomal protein L3
• Protein accession: YP_001775133
• Protein GI: 170729700
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000000368377
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGTGCT ATTCAATGGG TTTTGTGGGC CGTAAGGCTG GTATGAGTAG GGTATTCCTT 
GAGGATGGTC GTTCGATACC TGTTACTCTC ATAGAGGCGA CTGCGAATCG TGTCGTGCAA 
ATAAAAACTT CCGATGTTGA CGGTTATGAT GCTATTCAGG TAACGGTTGG TTCGCGTCGT 
TCTGTTCTTG TGAATAAGCC TGAGTCTGGT CATTTTGCTA AAGCAAAGGT TGAGGCAGGT 
CGTGGGTTGT GGGAGTTTCG TGTCGAAAAA ACTCAGCTTG GTAGTTATAG TGTTGGTTCT 
GAGGTTGGGT TAAGTATTTT TGCTGTTGGT CAGAAGGTAG ATATTCAGGG TATAACCAAG 
GGTAAGGGGT TTCAAGGTAC TATTAAACGC CATAATTTTA GGATGGGTGA TGCTACTCAT 
GGTAACTCTT TGTCGCATCG TGCGCCGGGT TCCTTGGGGC AGCGGCAGAC CCCTGGGCGT 
GTGTTTCCGG GAAAAAAGAT GTCTGGTCAT ATGGGCGCTG TGAGGCAGAG CGTCCAAAAT 
CTTGAAGTGA TTAAGATTGA TGTTGAGCGT TTCTTGATTG CTGTTCGCGG CGCTATTCCT 
GGTGCTTCTG GTGGTGATGT CCTCATTCGT TCGGCTAGTA AGATATAG 

 

Protein sequence

MGCYSMGFVG RKAGMSRVFL EDGRSIPVTL IEATANRVVQ IKTSDVDGYD AIQVTVGSRR 
SVLVNKPESG HFAKAKVEAG RGLWEFRVEK TQLGSYSVGS EVGLSIFAVG QKVDIQGITK 
GKGFQGTIKR HNFRMGDATH GNSLSHRAPG SLGQRQTPGR VFPGKKMSGH MGAVRQSVQN 
LEVIKIDVER FLIAVRGAIP GASGGDVLIR SASKI