Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0380 |
Symbol | sdhA |
ID | 6119591 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 437648 |
End bp | 439438 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641648453 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_001775024 |
Protein GI | 170729591 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCTT ATACAATTAC CGAACACAAA TATGACATGG TTGTCGTTGG TGCTGGCGGT GCTGGTCTAC GTGCCACGTT CGGTTTGGCT CAGAAAGGCT TACAGACTGT CTGTCTGACA AAAGTATTCC CGACGCGTTC GCATACCGTC GCTGCGCAAG GTGGTATCTC CGCTGCGCTT GGTAACATGG GAGAGGATGA TTGGCGTTAC CATTTTTATG ACACCATCAA AGGGTCAGAC TGGCTGGGTG ACCAGGATGC GATTGAGTAC ATGTGCCGTG AGGCAATCCC GGCTGTGATC GAACTAGAAC ACTATGGTGT TCCGTTCTCG CGTACTGCAC AAGGCAAGAT TTACCAGCGG CCATTTGGTG GGATGACGAC ACGTTACGGT GAGGGGCCGC GGGCAGAGCG TACCTGCGCT GCAGCTGATC GAACCGGCCA TGCGATGTTA CATACCTTGT ACCAGCAAGC ATTGGCGCAC GACGCGCGTT TCATGATTGA GTACTTTGCA CTTGATCTGA TCTTCGACAA CGAGGGTGTG TGTCGCGGCG TGTTGGCGTT GGACATGGCC GAGGGATCCT TGCACCTGTT TCGTGCCCAT GGAGTCGTGT TGGCGACAGG TGGCTACGGT CGCACGTACT TCAGTGCAAC TTCTGCTCAT ACCTGTACTG GTGACGGTGG TGGCTTGGTG ATGCGTGCCG GTTTACCGAT GCAGGATATG GAGTTTGTGC AGTTCCATCC CACAGGAATC TATGGGGCTG GCTGCCTCAT CACCGAAGGA GTGCGTGGTG AGGGAGGAAT CTTGCGTAAC TCTAACGGGG AGCGCTTCAT GGAGCGCTAT GCACCGCACT ACAAGGATCT GGCCTCTCGT GATGTGGTGA GTCGCTCAAT GATTATTGAG ATCCGGGAGG GGCGCGGCGT TGGTGAACAC AAAGACCATA TATTGCTTGA TTTGACTCAC TTGGGTCCGA GCATGATCCA AGAAAAATTG CCTGGCATTG CCGAGAGTGC GCGTATCTTC GCTGGCGTGG ATGTGGCCAA GCAGCCGATT CCGGTGCTGC CAACAGTGCA TTACAACATG GGTGGTATTC CAACCAATTA CCATGGCGAA GTGGTGCGTA AAGTTGGTAA TGATCCTGAT GCAGTGGTGC CTGGGCTATA TGCAGTTGGT GAAGCGGCCT GTGTATCGGT GCACGGTGCC AATCGTTTGG GATCGAATTC GTTGCTTGAT TTGGTGGTAT TCGGTCGTGC GGTTGCCAAT CGTTGCGCCG AAACAATCAA GCAAAGTCAG CCGCATAAGG TATTGCCGTC GGATAGTTGC GACAAGGCAC TGGGCTTGCT TGATAAACTT CGCCATGCTG ACGGTTCCAC GCCGACAGCG GTGATTCGTG ACAGGATGCA ACGTACCATG CAGTCTGATG CTTCGGTGTT TCGTACGAGT AAGACGTTGC AAGAAGGGTG CGAAAAGATG AATGAAATCT TTGCCTTGTT TGATGACATC AAGGTTTCTG ATCGTTCACT CGTTTGGAAT TCGGATTTGA TCGAAACCTA CGAGCTGCAC AATTTGCTGT TAAACGCACT GGCTACGATT AACTCGGCTG AACAGCGCAA AGAGAGCCGT GGTGCTCATG CGCATGAAGA TTATCCAGAT CGCGATGACG AGAATTGGTT GAAACACACA TTAGTCAGTG TCGACGAAAA GGGCACATGC AGTTTTGACT ACCGCCCGGT GCACATGTAC ACGCTCAGCA AAGACGTGGA TGTGATACCT CCTAAGCCGC GCGTCTATTG A
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Protein sequence | MSAYTITEHK YDMVVVGAGG AGLRATFGLA QKGLQTVCLT KVFPTRSHTV AAQGGISAAL GNMGEDDWRY HFYDTIKGSD WLGDQDAIEY MCREAIPAVI ELEHYGVPFS RTAQGKIYQR PFGGMTTRYG EGPRAERTCA AADRTGHAML HTLYQQALAH DARFMIEYFA LDLIFDNEGV CRGVLALDMA EGSLHLFRAH GVVLATGGYG RTYFSATSAH TCTGDGGGLV MRAGLPMQDM EFVQFHPTGI YGAGCLITEG VRGEGGILRN SNGERFMERY APHYKDLASR DVVSRSMIIE IREGRGVGEH KDHILLDLTH LGPSMIQEKL PGIAESARIF AGVDVAKQPI PVLPTVHYNM GGIPTNYHGE VVRKVGNDPD AVVPGLYAVG EAACVSVHGA NRLGSNSLLD LVVFGRAVAN RCAETIKQSQ PHKVLPSDSC DKALGLLDKL RHADGSTPTA VIRDRMQRTM QSDASVFRTS KTLQEGCEKM NEIFALFDDI KVSDRSLVWN SDLIETYELH NLLLNALATI NSAEQRKESR GAHAHEDYPD RDDENWLKHT LVSVDEKGTC SFDYRPVHMY TLSKDVDVIP PKPRVY
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