Gene Xfasm12_0356 details

Gene Information

• Locus tag: Xfasm12_0356
• Symbol: lpxD
• ID: 6119563
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: -
• Start bp: 412744
• End bp: 413760
• Gene Length: 1017 bp
• Protein Length: 338 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 641648429
• Product: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• Protein accession: YP_001775003
• Protein GI: 170729570
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• TIGRFAM ID: [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.316445
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAATCT TTACTGCTCA AGAGCTCGCC GAACGCTTTA ACCTGCAACT GTTTGGGGAC 
GGCAACATCC GTATCCACGG TGTCGCCACA CTCGCACAAG CAAGTCCGGA ACAACTTAGC 
TTCCTCGCTA ATCCACGCTA CCTCACACAG CTACTCAATA GTCGTGCGGG CGTCATTGTG 
CTGCATGCCG ACGATGTCAA AGCAGCCTCT GGTACAGTAC TGATCGCCAA AGACCCTTAC 
GTCACTTTCG CCAAGATCGC CACACTATTC GACATAAAAC CAGCGCGTGA AGCGGGCATC 
CATCCTCTAG CAACCGTCGA TCCAAGCGCG CATGTCTCAC CAACCGCGCA TGTCGGCGCA 
TTTGTCAGCA TTGGCGCACG CAGCAGCATC GGCGCAAGCT GCATCATAGG AACCGGTAGT 
ATCATCGGCG ATGATTGCAC CATTGATGAC GGCAGTGAAC TCATTGCACG TGTCACGTTG 
ATCTCCAGAG TACGCTTGGG TAAACGGGTA CGCATTCACC CTGGTGCAGT GCTAGGTGGT 
GAAGGCTTCG GACTTGCAAT GGAAAGCGGA CACTGGATCA AAATACCGCA GTTAGGTGGC 
GTTGTGATCG GCGATGATTG CGAGATAGGC GCCAACAGCT GCATCGACCG CGGTGCACTT 
GACGACACTG TATTGGAAGA GGATGTGCAT ATCGACAATT TAGTGCAAAT CGCACACAAC 
TGCCGGATCG GAGCACATAC CGCAATCGCC GGCTGTACAG GCATTGCTGG TAGCGCGAAA 
ATTGGCCGCT ACTGTCTGCT TGGCGGCCAC GTTGGCGTCG TTGGTCACCT CCAGATCTGT 
GACAACGTCG TGATCACCGG CAAATCGGTC GTACGTAACT CAATTCACAC CCCCGGCGAG 
TACTCATCAG GTACTCCATT GACCGACAAT CGTACTTGGC GCAAAAACGC TGTACGGTTT 
AAACAGCTGG ATATGCTGGT GCGCCGCATG ATGGCCGTCA GTAAGGAGAA AGCATGA 

 

Protein sequence

MPIFTAQELA ERFNLQLFGD GNIRIHGVAT LAQASPEQLS FLANPRYLTQ LLNSRAGVIV 
LHADDVKAAS GTVLIAKDPY VTFAKIATLF DIKPAREAGI HPLATVDPSA HVSPTAHVGA 
FVSIGARSSI GASCIIGTGS IIGDDCTIDD GSELIARVTL ISRVRLGKRV RIHPGAVLGG 
EGFGLAMESG HWIKIPQLGG VVIGDDCEIG ANSCIDRGAL DDTVLEEDVH IDNLVQIAHN 
CRIGAHTAIA GCTGIAGSAK IGRYCLLGGH VGVVGHLQIC DNVVITGKSV VRNSIHTPGE 
YSSGTPLTDN RTWRKNAVRF KQLDMLVRRM MAVSKEKA