| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2179 |
|---|
| Symbol | |
|---|
| ID | 6204060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | - |
|---|
| Start bp | 2473408 |
|---|
| End bp | 2476431 |
|---|
| Gene Length | 3024 bp |
|---|
| Protein Length | 1007 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641703692 |
|---|
| Product | HsdR family type I site-specific deoxyribonuclease |
|---|
| Protein accession | YP_001830848 |
|---|
| Protein GI | 182682688 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAC CTATCCCACC CTTTCGTTAT GCACCTATTG TGTGCTCTGA GCAGAGCACC
ATTGTTGCCG AGTTTGTACC CGAGGCCTCG GGTGTGCGTG AGGCGGGATA TCAGTCCGAA
GCGGAGTTGG AAGCAGCTTT CATCAAGCAG TTGCAGGGGC AGGCCTACGA ATATCTGCCG
ATCACCTCGG AGGCCGCGTT GCTGGCCAAT CTTCGGCGCC AGTTGGAAAA GCTCAACAAG
GTCACGCTGT CGGATGCAGA GTGGGAAGGT TTTTTCAGTA CCTGCATCGC GGGTGCACAT
GACGGCATTG TGGAAAAAAC GGCACGTATT CAAGAAAACC ATGTGCAGGT CTTGAAGCGC
GACGATGGCA CCATTAAAAA CATGTGTCTG CTTGACAAGG TCAACATCCA CAACAACACC
TTGCAGGTGA TGAATCAGTA CGCAGTGGAG GGCGCTCGTG CCAACCGCTA TGACGTCACG
GTGTTGGTGA ACGGTTTGCC GATGGTGCAT GTTGAGTTGA AGCGCCGCGG CGTGGACATT
CGCGAGGCGT TCAATCAGAT CAACCGTTAT CAGCGTGATA GCTTTTGGGC GGGTTCGGGG
TTGTTAGATT ATGTGCAGCT TTTTGTCATC AGCAATGGCA CGTTGACCAA GTATTACAGC
AATACGGTGC GTGCCGGGCA TGTGGAGGAG CAATCTAACA AGCGCAGTAA GAGTAAGACG
TCCAACAGTT TCTCTTTTGC CATTTGGTGG GCAGATGCGA AAAATCAGCC GATCACCGAG
TTAACTAGTT TTACCAAAAC GTTTTTCGCC AAGCATTCGC TGCTTAACGT GCTGACCAAA
TACTGCGTGT TTAATGCCAA GCGTAAGTTG TTGGTGATGC GGCCTTATCA GATTGTGGCT
GCCGAGCGCA TTTTGCAACG CATTGTCATT GCCACACATC AGCAGCAGTT GGGTACGGTG
GCGGCAGGTG GCTATATTTG GCACACCACG GGCAGCGGCA AAACGCTGAC GAGTTTCAAG
GTGGCGCAAT TGGCATGCGG TCTGGGTGTG ATCGACAAGG TGTTGTTTGT GGTGGATCGT
AAGGACTTGG ACTACCAGAC GATGCGTGAG TACGAGTCTT TTCAGAAAGG TGCGGCGAAC
TCCAACACGT CCACGGCGGT ATTGCAACGG CAGTTGGAAG ATTCCGACGT CCACATCATT
ATCACCACCA TTCAGAAGCT TTCCCGCTTT GTCGCCAAGC ACAAGCAGCA CCCGGTGTAT
GGGGCGCATG TGGTGGTGAT TTTTGATGAG TGTCATCGTA GTCAATTCGG CGATATGCAC
ACCAAAATCA CCAGGGCGTT TCAGCGTTAT CACTTGTTTG GTTTCACTGG TACGCCCATT
TTTGCTGAGA ATGCAGGCAG TACACAGAAC CCGATGCGGC GCACGACGCA ACAGACGTTT
GGCGATACGT TGCATACGTA TACGATTGTT GATGCGATCA ATGATAAGAC GGTGTTGCCA
TTTCGCATTG ATTACATCAA TACGATCAAA TCACAGCCGA ATATCAAAGA TAAGAAGGTG
GCGGCTATTG ATACCGAGCG GGCGTTGTTG GCACCAGAGC GGATCAGGCA GATTGTGAGC
TATATCCGTG AGCACTTTGA CCAAAAAACC AAGCGTGCCA GCATCTACCG TCACGAGGGT
CAGCGACTGG CGGGGTTTAA TTCGCTGTTG GCCACTGCTT CCATTGATGC GGCTAAACGT
TATTACGCGG AATTGATGGC GCAGCAAAAG GAGCTGCCCG AGGCACGACG GTTGAAGGTG
GGGTTGATCT ACAGTGTTGC TGCCAATGAG GGGGGAGGTG ACGGGGGGCT GGGTGAGGAG
GAGTTTGAAA CTGAGGGTTT GGATCAAGAG TCGCGGAATT TTCTGGAAGC TGCGATCCAG
GATTACAACG CGTTGTTTGG TACCAGTTTC GATACCTCGG CAGACAAGTT CCAGAACTAC
TACAAGGATG TGTCGGAACG CCTGAAAAAA CGTAAGTTGG ACATTCTCAT CGTGGTCAAT
ATGTTCCTGA CCGGCTTTGA CGCGACCACG CTCAACACGC TGTGGGTGGA CAAGCCTCTG
AAGGCGCACG GTTTGATACA GGCTTATTCG CGCACCAACC GCATTCTCAA TTCGGTTAAG
AGCTACGGCA ACATCGTTTC TTTCCGCAAT CTGGAGCAGG AGACGAATGA GGCGCTGGCT
TTGTTTGGCA ACAAGGACGC CAAGGGCATC GTGCTGTTGC GGCCTTACGC TGAGTATTAC
AAGCAGTATG AGGAGCGGGT GGGGGAACTG ATGGCTGCAT TTCCGCTGGG GAAGGCGATC
GTCGGGGAGG CGGCACAAAA GGCATTTATC ACGTTATTCG GTTCGATATT GAGGCTGAAA
AATATTCTGA CTGCTTTTGA TGATTTTGGC GGTCAGGAAA TTCTCACGGA GCGGGAGTTT
CAGGATTATC AGAGTCTGTA TTTGAATCTG TATGCGGAAT TCCGCAGTGC ATCGGCTGCT
GAGAAGGAAT CGATTAATGA TGATGTGGTC TTCGAGATTG AACTCATCAA GCAGGTGGAA
ATCAATGTTG ATTTCATTTT GTTGTTGGTC GAGCAGTATG TGAAGAAAAA GGGGACGGGG
GAGGATAAGG ACATCCGTGC GACGATCGAG CGTGCCATTC ATTCCAGCCC CAGTTTGCGT
AATAAGAAAG AGTTGATTGA GCAGTTTGTC GATGCGGTGA GCATGAAGGC CAAGGTGGAT
GCGCAGTGGC AGGCTTTTGT GGCGGTGAAG CAGAGCCAGG AGTTGGAGGG CATCATCGCG
GAGGAGAATC TCAACGCTGA GGCGGCACGT GAGTTCATTG GAAATGCGTT CCGCGATGGC
GGCATCCCTG CCATGGGCAC GGCAATCACC AAAGTCTTGC CGCCGGTATC GCGATTTTCC
AAGAACAACG GCCATGCAGC CAAGAAGCAG GCGGTGCTGG ACAAGTTTGC TACCTTCTTT
GAGCGATATT TTGGGCTGGT TTGA
|
|---|
| Protein sequence | MSEPIPPFRY APIVCSEQST IVAEFVPEAS GVREAGYQSE AELEAAFIKQ LQGQAYEYLP
ITSEAALLAN LRRQLEKLNK VTLSDAEWEG FFSTCIAGAH DGIVEKTARI QENHVQVLKR
DDGTIKNMCL LDKVNIHNNT LQVMNQYAVE GARANRYDVT VLVNGLPMVH VELKRRGVDI
REAFNQINRY QRDSFWAGSG LLDYVQLFVI SNGTLTKYYS NTVRAGHVEE QSNKRSKSKT
SNSFSFAIWW ADAKNQPITE LTSFTKTFFA KHSLLNVLTK YCVFNAKRKL LVMRPYQIVA
AERILQRIVI ATHQQQLGTV AAGGYIWHTT GSGKTLTSFK VAQLACGLGV IDKVLFVVDR
KDLDYQTMRE YESFQKGAAN SNTSTAVLQR QLEDSDVHII ITTIQKLSRF VAKHKQHPVY
GAHVVVIFDE CHRSQFGDMH TKITRAFQRY HLFGFTGTPI FAENAGSTQN PMRRTTQQTF
GDTLHTYTIV DAINDKTVLP FRIDYINTIK SQPNIKDKKV AAIDTERALL APERIRQIVS
YIREHFDQKT KRASIYRHEG QRLAGFNSLL ATASIDAAKR YYAELMAQQK ELPEARRLKV
GLIYSVAANE GGGDGGLGEE EFETEGLDQE SRNFLEAAIQ DYNALFGTSF DTSADKFQNY
YKDVSERLKK RKLDILIVVN MFLTGFDATT LNTLWVDKPL KAHGLIQAYS RTNRILNSVK
SYGNIVSFRN LEQETNEALA LFGNKDAKGI VLLRPYAEYY KQYEERVGEL MAAFPLGKAI
VGEAAQKAFI TLFGSILRLK NILTAFDDFG GQEILTEREF QDYQSLYLNL YAEFRSASAA
EKESINDDVV FEIELIKQVE INVDFILLLV EQYVKKKGTG EDKDIRATIE RAIHSSPSLR
NKKELIEQFV DAVSMKAKVD AQWQAFVAVK QSQELEGIIA EENLNAEAAR EFIGNAFRDG
GIPAMGTAIT KVLPPVSRFS KNNGHAAKKQ AVLDKFATFF ERYFGLV
|
|---|
| |