| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1180 |
|---|
| Symbol | |
|---|
| ID | 6202346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | - |
|---|
| Start bp | 1319718 |
|---|
| End bp | 1322249 |
|---|
| Gene Length | 2532 bp |
|---|
| Protein Length | 843 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641702708 |
|---|
| Product | P4 family phage/plasmid primase |
|---|
| Protein accession | YP_001829882 |
|---|
| Protein GI | 182681722 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3378] Predicted ATPase |
|---|
| TIGRFAM ID | [TIGR01613] phage/plasmid primase, P4 family, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000898776 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGATT CTATCACGGT TCTAAAACAC CCCGTAAATA CCCTCGCCAA AACATGGTGC
GCTGATGGCT CGGTGAAAGC CTACGACAAC GCCAAGTTCT TCCAGGTGGA GCAACGAGCG
CTCAACAATA GCCGCGAGCT GTCAGCACTT CTCACGGAGC TGGAGCAGAA CCCGCATGCC
TGCGTGATTC GCGGGGCGTA TGTGGGCGAT GCCAAAGCCG CTGCGCTTGA TACTGAGTTC
CAGAAAGGAA AAGTACGGCG CATTGCCGAG CTGTACGAGG ATATCCCGCA TCACTGGATG
CTCGTTGAGA TTGATAATTT CGATCCGGTG CGCCGCGATC CGGTGGCCGA TCCGGTGGGG
AGCATCGGCG AGTTCCTCCA CGCACATCTT CCCTTTGGCT TCCACGGCGC AGATTACCAT
TGGCAGTTAT CCAGTAGCGC GGGGCGTCCT GAGTGCGCAG GGAAGCTAAA AGCCCATGTG
TGGTTTTGGC TACATAAGCC GTACACCAGC GCACAGCTCA AAGCCTGGGC CGCTGTCTGC
GCTCCAGGGC TGGACGCTTC TGTATTTAAT ACGGTGCAAA TCCACTACAC CGCCGCCCCT
GTGTTTGAAG CCGGTGTGGC CGATCCAGTT CCAGTGCGTA GCGGCTTTGT GGAAGGCATT
CTTGAGGATT CTGTATTGCT GGAGATTGAT GCGGCGATCC TGGAAAGCGC CAAGACTGAA
GGCAAACCCA GCCGCCAACA CAAGCTCATG GCCGCGGCTG CCAACGACCC TGTGGCTGTG
CGCCTTGAAG AACGCGGGTT TATCTTATCG ACCGGTAAGG CGGGTGAACT CTTTATCGAA
TGCCCCTTGG CTAAGCAGCA TACGCAAGCC TCTAGCCCCA CAGCCACCGT GTATTACCCA
GCACATACCG GAGGTTATGC CAATGGCGCG TTTGTATGCC AGCACGCCCA CTGTCGCGGG
GTGCCGCAAT CGGCGTTTCT ACATGAAATA GGAGTCTATT CCGATGAGGA AATGCTAGCC
ATGTTCGAGG ACCTCACGGA CGAGCCTGCC ACGCTTGCCG TTGAGCGGCA CGACGTGCCC
GAAGCGCTGT ACCTAACCAC TGACACAGCG AACGCAGTGC GGATTGCCAA GCACTACGGC
AAACGGCTGA TGGTGTCTGC TGAGCGCTGG TTCGTCTGGG AAGGCACCCA CTGGGCGCAT
GGTATGGATG CGGCGCGCCT GTTGGCGTTA AAACTCTCCA AAATCATTCG CGGCGAAGTG
GAGCAATGGC GCACCAAGCG AGCGGACACG GAGAAGGAAA AAAGCAAAAA CGCAAAGATC
GCTGCTGCGC TGGAGGCATG GGGCAAGAAG TCGGAAATGC GCAGCACTGT AGAGGCGGCG
ATGGCGCTAG CCAAAAGTAT GTTGGTCGTG AAAGCGGAAC GGCTGGACAC GGACCCCTGG
TTGTTGAACT GCGCCAATGG CACCGTGGAC CTGCGTACCG GAACGCTTAA AGCGCATCGC
CCCGAGGATT ACATTACGCG GGTTGTCCCC GTTAACTACA CACCCGATGC CGCTGCACCT
GTCTTTAAAA AGACACTGGC GCGCATCACC TGTGAAGAAG GGCAGGCCCA GCAGCCGCTC
AGTGACTTTC TGCAACGCTG GTTCGGGTAC TGCGCCACCG GCTCGGTGCG TGAGCATAAG
ATGGCCGTGA TGTACGGGAT GGGCCGTAAC GGGAAAAGTA CGCTACTGGA CCTGATCTCA
GGGATTCTCG GCAGTTATGC AGGTGTGGCC GCCCCTGGGC TGCTGATGGA CGGAGGCCAC
GACCGACACC CAACCGAGAT TGCCGATCTG GCGGGACGGC GCATGATGAC GGTGAATGAA
ACCAGCGAAG GTGGCATCTT GCGCGAAGGC TTCGTAAAGC AGGCCACCGG AGGGGATTCA
CTCAAGGCCC GTCATATGCG TAGTGACTTC TTCGAGTTCC AGCCCACGCA CAAGCTGCAA
TTACTCACTA ACCATAAGCC TGTCATCAAG GGGCAGGACG TGGGCATCTG GAGTCGCCTA
ATGCTCATCC CGTTTAAAGC GCGCTTCGGC ACCGCTGAAG AAATTGAGGC GGGGGCCGCC
CAATACCCCA TAGACCATAA AATCACTGAG AAGCTGGCCG CTGAACGAGA AGGGGTGTTG
GCCTGGCTCG TGGCAGGGGC TGTGGAGTGG TGCAAGAACG GGCTGAACCC TCCGGAGATT
GTGAGGGACG CTTCAAAGGA CTACCAGACG GAGCAGGACC GCATTGCCCA GTTCATTGAG
GAAGAATGCG TATTAGGGAT GGAACACGAG GAGAAACTAA CCGCTCCGAT GGGCGGTGGG
TTATACCCCG CGTATACGCA ATGGTGCAAA GACAGCGGTG TTTACCCACT GTCCAAAACC
CGTTTTCTTG GCGAGCTGGA ACGGTGCGTG CCGAAATTCA GGAAAAAGCA TATATACGAA
ACCCCTGAGG GGGGAAAGCG CCGGATGTTT CTAGCTATTC AAGGTATCGC GTTGGCGGAC
GCTGACCTGT AA
|
|---|
| Protein sequence | MRDSITVLKH PVNTLAKTWC ADGSVKAYDN AKFFQVEQRA LNNSRELSAL LTELEQNPHA
CVIRGAYVGD AKAAALDTEF QKGKVRRIAE LYEDIPHHWM LVEIDNFDPV RRDPVADPVG
SIGEFLHAHL PFGFHGADYH WQLSSSAGRP ECAGKLKAHV WFWLHKPYTS AQLKAWAAVC
APGLDASVFN TVQIHYTAAP VFEAGVADPV PVRSGFVEGI LEDSVLLEID AAILESAKTE
GKPSRQHKLM AAAANDPVAV RLEERGFILS TGKAGELFIE CPLAKQHTQA SSPTATVYYP
AHTGGYANGA FVCQHAHCRG VPQSAFLHEI GVYSDEEMLA MFEDLTDEPA TLAVERHDVP
EALYLTTDTA NAVRIAKHYG KRLMVSAERW FVWEGTHWAH GMDAARLLAL KLSKIIRGEV
EQWRTKRADT EKEKSKNAKI AAALEAWGKK SEMRSTVEAA MALAKSMLVV KAERLDTDPW
LLNCANGTVD LRTGTLKAHR PEDYITRVVP VNYTPDAAAP VFKKTLARIT CEEGQAQQPL
SDFLQRWFGY CATGSVREHK MAVMYGMGRN GKSTLLDLIS GILGSYAGVA APGLLMDGGH
DRHPTEIADL AGRRMMTVNE TSEGGILREG FVKQATGGDS LKARHMRSDF FEFQPTHKLQ
LLTNHKPVIK GQDVGIWSRL MLIPFKARFG TAEEIEAGAA QYPIDHKITE KLAAEREGVL
AWLVAGAVEW CKNGLNPPEI VRDASKDYQT EQDRIAQFIE EECVLGMEHE EKLTAPMGGG
LYPAYTQWCK DSGVYPLSKT RFLGELERCV PKFRKKHIYE TPEGGKRRMF LAIQGIALAD
ADL
|
|---|
| |