Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_0872 |
Symbol | |
ID | 6202202 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | + |
Start bp | 1025845 |
End bp | 1030167 |
Gene Length | 4323 bp |
Protein Length | 1440 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641702403 |
Product | YadA domain-containing protein |
Protein accession | YP_001829582 |
Protein GI | 182681422 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport [W] Extracellular structures |
COG ID | [COG5295] Autotransporter adhesin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.263955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAATTC ATACTGCACT GCCCATGGTT CGGTTGGGTG GAATCGAAGG TGTTGATCCA TTATTTTTGC CGAAATACAA GATCGGTCGG TCGCTGCAAC ACGCAGTGAT GACATCAGCA GCTTCAAGTA AAAAAGGTAC GCAGCCACGA CGTTCCAACA ATGCGATGAC AGCTAAGCGT AGCGCGAAAC CGCACGACCG GAGGCAGTTG CATATTGTCT TATTGACAGT GCTTGCAGCC TCAACGGGAT ATACGGGGAA AGTATCAGCT CAAGTCTATG TAAATTCCGA CTCGACTGAA AATTGCGTAG AAATACTGGG CGACAGTAGT CAGACATCCT TCATTCATAG TGCTTCTAAC GATAAATGCA AGCCAGATTT CACACAAACA GAGTATTCCC TGTTTTATGA CTATAGAAAC CTGGTTCTTG GTGGGTCCTT ATATGTCAAT GAGGGTAAAC TCGGGCTAGT CGATATTTCT GGTGCAACTT ATTCTATGCG CCTAGGCAGC ATTGCTACCA TGAATGGCTC GGCTGGCATA GATTCGATTG CCATCGGTTC AGGGCAAGGT TCCCAAACGG ACGGGAATAC CAGCGGCGCC ACTGTAGCAC AGGGACTGCG TTCGATTGCG ATTGGTACTA CGGCCCGTTC GCAATCTCAA GATGCGATTT CTATAGGGAC CGGTGCATCC ACTACAGGCA ATTTTGCGAT AGCGATAGGT AATGGAGCAT TGACATCAAT TGCCAATGGG ATAGCGCTTG GTGCATCAAG CAGTGTCACC ACAAGAGGAG GTGTGGCACT GGGACAAGGC TCGCTGGCTG CGACCGCTTC TGGCATTACT GGCTATGATC CGGTCACCAA GAGCACCTCG ACTCTTTCCA CTTCAATATG GAGAAGCACG CTGGGGGCAG TCAGTATCGG TAATATAACC TCTAGCACCT CCCAGACACG TCAACTTACA GGATTGGCGG CAGGTAGGTC AGATACGGAT GCGGTGAATG TTGCCCAGCT GAAGTTGCTT GCTGAATCTG TGGGTGGTGG TTGGAATTTG ACTGCTTCTG GAGCCAACAG CAGTAATGTG GCGCTGGGTG AGTCGGTAGA TTTGAAGAAT AGTGACGGAA ACCTCTTAAT CACCAAAGCA ACCGACAGCA ATGATGTGAC TTTTAATTTG GCCACTGCTT TAAAAGTGGA CAGTTTGACC ACTGGCAACA CGGCGATGAC GACCGATGGT GTGACGGTGG GCAAGAGAGT TACCTTGGAT TCGACAGGAT TAGTGATTGC GGAAGGTCCC TCGGTAATCA GTTCGGGCAT TAATGCTGCC GGCCAAAAGA TCATCAATGT TGGAACGGGT ACTGCGGATA CAGACGCCGT CAACTTCGGT CAGCTGCAAG CGGTGAGCGA TACAGCAAGC AAGGGCTGGA ATTTGCTAGC TTCTGGAGCC AACAGCAGTA ATGTGGCGCC GGGTGAGTCG GTGGATCTGA AGAATAGTGA TGGGAACCTC TTAATCACCA AAACAACCGA TAGCAATGAT GTGACTTTTA ATTTGGCCAC TGCTTTAGAA GTGGACAGTT TGACCACTGG CAACACGGCG ATGACGACCG ATGGTGTGGC GGTGGGTAGT AACGTGAAGT TGGGCTCGAC GGGATTAGTT ATTACAGATG GTCCGTCTGT GACCAGCTCG GGCATTAGCG CCGGTAACCA AAAGATAACG AATGTTGCCG CAGGTACTGC GGATACCGAT GCCGTCAACT TTAGCCAGTT GCAAGCGGTG AGCAGTACGG CCAGTAAGGG GTGGAATTTG CTGGCTTCTG GAGCCAACAG TAGTAATGTG GCGCCGGGTG GGTCGGTGGA TCTGAAGAAT AGTGATGGGA ACCTCTTAAT CACCAAAACA ACCGACAGCA ATGATGTGAC TTTTAATTTG GCCACTGCTT TAGAAGTGGA CAGTTTGACC ACTGGCAACA CGGCGATGAC GACCGATGGT GTGGCGGTGG GTAGTAACGT GAAGTTGGGC TCGACGGGAT TAGTTATTAC AGATGGTCCG TCTGTGACCA GCTCGGGCAT TAGCGCCGGT AACCAAAAGA TAACGAATGT TGCCGCAGGT ACTGCAGATA CCGATGTCGT CAACTTTAGC CAGTTGCAAG CGGTGAGCAG TACGGCCAGT AAGGGGTGGA ATTTGCTGGC TTCTGGAGCC AACAGTAGTA ATGTGGCGCC GGGTGGGTCG GTGGATCTGA AGAATAGTGA TGGGAACCTC TTAATCACCA AAACAACCGA CAGCAATGAT GTGACTTTTA ATTTGGCCAC TGCTTTAGAA GTGGACAGTT TGACCACTGG CAACACGGCG ATGACGACCG ATGGTGTGGC GGTGGGTAGT AACGTGAAGT TGGGCTCGAC GGGATTAGTT ATTACAGATG GTCCGTCTGT GACCAGCTCG GGCATTAGCG CCGGTAACCA AAAGATAACG AATGTTGCCG CAGGTACTGC AGATACCGAT GTCGTCAACT TTAGCCAGTT GCAAGCGGTG AGCAGTACGG CCAGTAAGGG GTGGAATTTG CTGGCTTCTG GAGCCAACAG TAGTAATGTG GCGCCGGGTG GGTCGGTGGA TCTGAAGAAT AGTGATGGGA ACCTCTTAAT CACCAAAACA ACCGACAGCA ATGATGTGAC TTTTAATTTG GCCACTGCTT TAGAAGTGGA CAGTTTGACC ACTGGCAACA CGGCGATGAC GACCGATGGT GTGGCGGTGG GTAGTAACGT GAAGTTGGGC TCGACGGGAT TAGTTATTAC AGATGGTCCG TCTGTGACCA GCTCGGGCAT TAGCGCCGGT AACCAAAAGA TAACGAATGT TGCCGCAGGT ACTGCAGATA CCGATGCCGT CAACTTTAGC CAGTTGCAAG CGGTGAGCAG TACGGCCAGT AAGGGGTGGA ATTTGCTGGC TTCTGGAGCC AACAGTAGTA ATGTGGCGCC GGGTGAGTCG GTAGACCTGA AGAATACCGA TGGAAACATC GTTATCAGCA AAGAAAGCGG CAGCAATGAT GTGCTTTTCA ATCTGTCCAG CAGTTTGAAG CTGGACAAAT TGACCGTTGG CGACACGGTG ATGACGACCA ATGGTGTGAC AGTGGGGAGT GGCGTGACGT TGGGTTCGAT GGGATTAGTT ATTACGGATG GTCCCTCGGT GACCAGTTCT GGTATTAATG CTGGCAGCCA AAAGATAACG AATGTTGCCG CAGGTACTGC GGACACGGAT GCTGTTAATC TTAGCCAACT TAATACTGCA ATGGCGAGCT CCGGCGCTAA ATCAGTCCAT TACTACAGTA CATATGATGG TGGTACCCAA GGAGGTAACT ACAATGGTGA TGGTGCGACA GGCACTGGGT CTATAGCCGT TGGTGTTGGC ACGCTTGCAT CCGCTGAAGG AGCGACAGCA ATCGGTTCAG GGGCGGCGGC TAGTGGGAAA GGCTCCACGG CGATCGGTCG TAACGCAGTT GCCAGCGCTG ATGGTAGCGT GGCCTTGGGC GATGGTGCAA AAGATGGTGC GCGTGGGGCA GAGAGTTACA CCGGTAAATA TTCAGGCGTA CAGAACAATA CGGTGGGAAC TGTTTCGGTA GGTGATGCTT CCAAGGGTGA AACCCGCACA GTGAGTAATG TGGCTGATGC CAAAGAAGCG ACGGATGCGG TGAATTTGCG TCAGCTTGAT CAAGTGGCTC AAGATGCCAA TCGTTATGTT GATAACAAGA TAGAAAGCCT TAGCGAAGGG CAGACTTTCG TTAAGGTGAA CAGCGTGAAC AATAGTGCCA CTCCTATTGC AGCTGGAGTC GATGCAACAG CGATTGGTGT CGGTGCCACC GCTTCTGGTG CCGATAGCAT TGCAATGGGT AATAAAGCCA GTGCGTCTGC TGACAATGCG GTTGCCATTG GTAACCATTC AGTAGCCGAC CGTGCAAACA CTGTTTCTGT GGGATCGGCT GGTTCTGAGA GGCAGGTGAC GAATGTAGCC GCTGGCACTG CTGATACTGA TGCGGTCAAT GTAAGCCAAC TCAATCAAGG CTTGATCACT GCCAAACAGT ATACGGATGG GGTTGTAGGG AGTCTTCGTA GGGATACTGA CGGTGGTGTG GCGGCAGCAA TTGCAACAGC AAATCTCCCA CAGGCTTATA TTCCGGGACG CGGGATGACC TCCGTAGGCG TTAGTAGTTA CCGAGGGCAA TCTGCCATTG CGGTGGGTGT TTCTTCGGTT TCTGAAAGCG GACGTTGGGT ATTCAAGTTC AGCGGTAGTG CAAATACCCG TAGTCAAGTG GGTATTGGTG CAGGTGTGGG TTATCAGTGG TAA
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Protein sequence | MQIHTALPMV RLGGIEGVDP LFLPKYKIGR SLQHAVMTSA ASSKKGTQPR RSNNAMTAKR SAKPHDRRQL HIVLLTVLAA STGYTGKVSA QVYVNSDSTE NCVEILGDSS QTSFIHSASN DKCKPDFTQT EYSLFYDYRN LVLGGSLYVN EGKLGLVDIS GATYSMRLGS IATMNGSAGI DSIAIGSGQG SQTDGNTSGA TVAQGLRSIA IGTTARSQSQ DAISIGTGAS TTGNFAIAIG NGALTSIANG IALGASSSVT TRGGVALGQG SLAATASGIT GYDPVTKSTS TLSTSIWRST LGAVSIGNIT SSTSQTRQLT GLAAGRSDTD AVNVAQLKLL AESVGGGWNL TASGANSSNV ALGESVDLKN SDGNLLITKA TDSNDVTFNL ATALKVDSLT TGNTAMTTDG VTVGKRVTLD STGLVIAEGP SVISSGINAA GQKIINVGTG TADTDAVNFG QLQAVSDTAS KGWNLLASGA NSSNVAPGES VDLKNSDGNL LITKTTDSND VTFNLATALE VDSLTTGNTA MTTDGVAVGS NVKLGSTGLV ITDGPSVTSS GISAGNQKIT NVAAGTADTD AVNFSQLQAV SSTASKGWNL LASGANSSNV APGGSVDLKN SDGNLLITKT TDSNDVTFNL ATALEVDSLT TGNTAMTTDG VAVGSNVKLG STGLVITDGP SVTSSGISAG NQKITNVAAG TADTDVVNFS QLQAVSSTAS KGWNLLASGA NSSNVAPGGS VDLKNSDGNL LITKTTDSND VTFNLATALE VDSLTTGNTA MTTDGVAVGS NVKLGSTGLV ITDGPSVTSS GISAGNQKIT NVAAGTADTD VVNFSQLQAV SSTASKGWNL LASGANSSNV APGGSVDLKN SDGNLLITKT TDSNDVTFNL ATALEVDSLT TGNTAMTTDG VAVGSNVKLG STGLVITDGP SVTSSGISAG NQKITNVAAG TADTDAVNFS QLQAVSSTAS KGWNLLASGA NSSNVAPGES VDLKNTDGNI VISKESGSND VLFNLSSSLK LDKLTVGDTV MTTNGVTVGS GVTLGSMGLV ITDGPSVTSS GINAGSQKIT NVAAGTADTD AVNLSQLNTA MASSGAKSVH YYSTYDGGTQ GGNYNGDGAT GTGSIAVGVG TLASAEGATA IGSGAAASGK GSTAIGRNAV ASADGSVALG DGAKDGARGA ESYTGKYSGV QNNTVGTVSV GDASKGETRT VSNVADAKEA TDAVNLRQLD QVAQDANRYV DNKIESLSEG QTFVKVNSVN NSATPIAAGV DATAIGVGAT ASGADSIAMG NKASASADNA VAIGNHSVAD RANTVSVGSA GSERQVTNVA AGTADTDAVN VSQLNQGLIT AKQYTDGVVG SLRRDTDGGV AAAIATANLP QAYIPGRGMT SVGVSSYRGQ SAIAVGVSSV SESGRWVFKF SGSANTRSQV GIGAGVGYQW
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