Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_0623 |
Symbol | |
ID | 6203714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | + |
Start bp | 734508 |
End bp | 736379 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641702160 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001829341 |
Protein GI | 182681181 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.185828 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAAGCC CCATCATGTC CAATGAACGA ACTGCTCAGC AATCCGATAT CAAGCAACTG ATCAGCAAGG GGTTGGAGCA GGGTTACCTG ACTTACGCCG AAGTCAATGA TCACCTACCA GAGGATCTGG TGGATCCTGA TCAAATTGAA GACATTATTG GGATGATTAA CGGAATGGGC ATTGAGGTCC ATGAAGTGGC TCCCGATGCT GAGACTTTGT TGCTTAACGA AGGAAACACT GGGAACAGGG AAGTCGACGA TACCGCTGCA GAAGAGGCCG CAGCTGCGCT TAGCGCCCTT GATACCGAAG CAGGACGTAC TACCGATCCG GTACGTATGT ACATGCGTGA GATGGGTACG GTCGAACTAT TAACCCGTGA AGGTGAAATA GCAATTGCAA AGCGTATTGA AGAAGGCTTG AGCGAGGTAC AAGCTGCTTT AGGCGCTTTC CCGTTATCTA CGGAATTACT GCTTAGTGAA TATGAGTTGC ATAAAGAAGG TAAGCGGCGT CTGACTGAGG TTGTCGTTGG CTTTAATGAT TTGATAGAGG AGGATAACTC CGTAACCTCC TCAGTGGACG TTACTGACGA GTCCATTGTT GAGGTTGACG AAGAAGACGA TGACAGTGTC GGTAATGATG AGGATGCGCC TATGATTGGT CCTGATCCTG CCGAAGTTGC TTCGCGTATC GAATCTCTGT CCACTGAGTA TGCCAAGTTC AAGAAACTTT ACGCCAAGCA TGGCCCTGAG CACAAAGCAG TCATTAAGGT GCGTGAAGAT GTGGCTGCGA TCTTTGTGAC GTTCAAACTG TCGTTGCCAT TGACCGATTT GCTTGTTCAG CAGCTACAGA ATATGGTGAA TTCTGTCAAG GATCATGAGC GCAAAGTGCT TCACTTGGCG ACAAATGTAG CCAAAATGCC GCGTAAAGAC TTCATCCGTT CCTGGGAAAA CAACCAGACA AATTTAGAAT GGGTGGAGGA TGCGATTAAG CGCAAGCAGA AATGGTCCTC TGCGTTGCGT GATATCAAAG ATCAGATCAC CGCTGAGCAG CAAGCTTCCA TTGATTTGGA GAAAGTCAAT TCTTTGACGT TAGCCGACAT CAAAGAGATT AACCGTATGA TGGTTTATGG TGAAGCAAAA GCATCCAAGG CGAAGAAAGA GATGGTTGAA GCTAATCTTC GCTTAGTGAT ATCGATTGCT AAGAAGTATA CCAACCGAGG GTTGCAGTTC TTGGATTTGA TACAGGAAGG CAACATCGGT TTGATGAAAG CAGTGTGTAA GTTTGAACAC CGTCGTGGCT TTAAGTTCTC CACCTACGCG ACTTGGTGGA TCCGTCAGGC AATTACTCGT TCTATTGCCG ATCAGGCGCG CACCATTCGT ATCCCGGTGC ATATGATTGA GACGATCAAC AAACTTAACC GTATCTCTCG TCAAATGTTG CAGCAGTTTG GTCGCGAGGC GACTCCAGAG GAATTGGCTA AGGAAATGGA CATGCCTGAG GACAAGATCC GTAAGGTAAT GAAGATTGCT AAAGAGCCAA TCTCAATGGA GACTCCGATC GGAGATGATG AAGATTCTCA TCTGGGTGAC TTCATTGAGG ATCCTAATGT TGAGTCTCCT GTGGATACCA CAACCAATGT CAACTTGTCG GAAACAGTGC GTGAAGTGTT GGCTGGTTTG ACACCAAGAG AGGCGAAGGT TCTGCGTATG CGTTTCGGTA TTGACATGAA TACAGACCAC ACTCTGGAGG AGGTGGGTAA ACAATTTGAT GTCACTCGTG AACGTATTCG CCAGATTGAA GCCAAAGCAT TACGGAAACT TCGTCATCCA AGCCGTTCTG AACAACTGCG CTCATTCCTT GATATTGACT GA
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Protein sequence | MRSPIMSNER TAQQSDIKQL ISKGLEQGYL TYAEVNDHLP EDLVDPDQIE DIIGMINGMG IEVHEVAPDA ETLLLNEGNT GNREVDDTAA EEAAAALSAL DTEAGRTTDP VRMYMREMGT VELLTREGEI AIAKRIEEGL SEVQAALGAF PLSTELLLSE YELHKEGKRR LTEVVVGFND LIEEDNSVTS SVDVTDESIV EVDEEDDDSV GNDEDAPMIG PDPAEVASRI ESLSTEYAKF KKLYAKHGPE HKAVIKVRED VAAIFVTFKL SLPLTDLLVQ QLQNMVNSVK DHERKVLHLA TNVAKMPRKD FIRSWENNQT NLEWVEDAIK RKQKWSSALR DIKDQITAEQ QASIDLEKVN SLTLADIKEI NRMMVYGEAK ASKAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVCKFEH RRGFKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QQFGREATPE ELAKEMDMPE DKIRKVMKIA KEPISMETPI GDDEDSHLGD FIEDPNVESP VDTTTNVNLS ETVREVLAGL TPREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP SRSEQLRSFL DID
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