Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_0031 |
Symbol | |
ID | 6201943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | + |
Start bp | 39714 |
End bp | 43301 |
Gene Length | 3588 bp |
Protein Length | 1195 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641701555 |
Product | transcription-repair coupling factor |
Protein accession | YP_001828763 |
Protein GI | 182680603 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCACCAT CCTCCTTTCC CTCTCCGCTG CTGCCCCGTG CCGGGCAGCT CCGTGCATTT TGGCGTGCTC CGGTCTCTCC AACGGCGCTT GCTTGGCATA TCGCTTGTGC TGCTCAGGCA CACAGGGGAC CATTGCTGTT GGTCACGCAT GACAATCACA GTGCGCACCA GATTGAGGTT GACCTACAGA CTCTATTGGC GCATTGCTCA GGGTTGCCGG TCATTGGTTT CCCTGATTGG GAGACGCTTC CTTACGACCA ATTCAGCCCT GATCCCAATA TTGTCAGCCA GCGTTTGGCG ACGTTGCATC GGTTGCCTTC ATTAGCACGC GGTATTGTCG TCGTGCCGGT ACAGACGTTG ATGCAGCAGT TGGCACCGTT GAGTTACATC GTTGGTGGCA GCTTTGATTT TAAGGTGGGG CAACGCTTGA TTCTGGATGC TGAGAAGCAG CGGTTGGAGC GGGCGGGTTA CCGCAATGTG CCGCAGGTGA TGGACCCCGG GGATTTTACG GTGCGCGGGG GGCTGCTTGA TGTTTATCCG ATGGGTACGG ATGTACCGCT GCGAATCGAA CTATTGGATG AGGAGATTGA TTCAATCCGT ACGTTCGATC CCGAATCGCA GCGTTCGTTA AATCAGGTCG ATGTCATTCA TATGCTGCCC GGCCGCGAAG TACCGTTGGA TCCTGCGGTG CTTGAACGCG TTTTGGTGCG GTTGCGTGAG CGTTTCGATC TGGATACTCG GCGCAGTGCG TTGTATCAGG ATTTGAAAGC CGGGTTAGCT CCCTCAGGGA TCGAGTACTA TTTGCCGCTT TTTTTTGAGT CGGGGCGTGG TGGGAAACAC GCGACCGCGA CGCTTTTTGA TTATTTGAGT GCAGATTTAT TGGTGTTAAC GGCACCAGGT GTCTCTAACG CTGCCGATGC GTTCTGGGGG CAGACGATGC AACGTTATGA GCAACGTCGC CACGATATTG AGCGCCCGTT GTTACCGCCG CAGGAGCTAT ACCAGTCCCC GGATGCGTTG CGTGAACGCT TGAATCGTTT GCCGCGCATT GAGGTTTGGT CTGCCGAACA TGCGCATATC GATAAAGCAG AAGTATTGGA TGAGCAGCCA TTGCCGGTGG CGACTAAGGA TGTTTCCGTT GGACAGGCAT TGAGAACTTT CCTTGCTGAT TACGCTGGCC GTGTGTTGAT TGCTGCTACC TCGCCTGGTC GTCGTGAGGT GCTGCTTGAA TTGTTGGCCA CCGCCGATCT GCAACCGGAG GTATTGCCTG ACTTTAGGTC GTTTTTTCTC TCTGCGGCCG AAGTGAGTGA TTTGGGGGAA GCCAATCGCG ATAGTGGCAA TGGCGTGTCA GGTTCGAATG ATGCGGATGC GGCTGCTTTT CACGTCATTG CTTCGCAGGG TGGGTCCTTA CCAACGTTCG CGATTACTGT GGCTCCGTTG GAGGATGGGT TTTCTCTCAG TGTGCCGCCT ATTGCGGTGC TTACCGAACG TCAATTGTTC CCTGAGCGGG TGAATCCGGT GCGCCGCAGT CGGCGTGTTG GGCGTGAGCC TGAGGCAATT ATTCGTGATC TGGGTGAGTT GTCCGAGGGT GCCCCTATCG TGCACGAGGA CCACGGGGTC GGTCGTTACC GCAAACTGAT CACCATGAAC GTCAGTGGTA TGCCTGGTGA GTTTGTGGAG ATCGAGTATG CAAAGGGGGA CCGTTTATAC GTTCCGGTTG CCCAATTGCA TCTGATTAGT CGCTACTCAG GCGCTTCGCC GGAGACCGCG CCGCTGCACT CGTTGGGTGG CGAGCAATGG AGCAAGGCCA AGCGCAAGGC GGCAGAAAAG GTACGCGATG TGGCTGCGGA GTTGTTGGAA ATTCAGGCGC GGCGTCAGGC GCGTGCAGGC TTGGCTTTGC GCATTGATCG TACGATGTAT GAACCTTTTG CAGCGGGTTT CCCATTCGAA GAGACTCCCG ATCAGCTTGC AGCGATTGAG ACGACGCTGC GTGATCTGCA ATCCAGTCAG CCGATGGACC GGGTAGTGTG CGGTGATGTT GGTTTTGGCA AAACGGAGGT GGCGGTGCGT GCTGCATTCG CTGCAGCCAG TGCAGGAAAA CAGGTTGCGG TATTGGTGCC GACGACGTTG CTAGCCGAAC AGCACTATCG AAATTTCCGC GATCGCTTTG CCGATTATCC GATTAGAGTC GAAGTGCTTT CGCGCTTCAA AAGCACTAAA GAAATCAAGG CCGAGTTGCA GAAGGTCAGT GAAGGCACCA TGGATGTCAT TGTCGGCACG CATCGGTTGT TGCAACCGGA CGTCAAGTTT AAAGACTTGG GTTTAGTCAT TGTCGACGAG GAGCAGCGTT TCGGGGTGCG TCAGAAGGAG GCGCTGAAGT CGTTACGTGC GAATGTACAT TTGTTGACGC TGACAGCTAC GCCCATCCCG CGCACGCTCA ATATGGCAAT GGCGGGGTTG CGTGATTTGT CGATCATTGC GACACCACCG CTGAATCGGC TGGCGGTGCA GACGTTTATC ACTCCTTGGG ATAATGCGCT GTTGCATGAG GCTTTCCAGC GTGAACTAGC GCGTGGTGGT CAGTTGTACT TTCTACATAA CGATGTGGAG AGTATCGGCA GGATGCAGCG TGATCTGGCC CAACTGGTGC CGGAAGCGCG TATTGGTATT GCCCACGGCC AGATGCCCGA ACGCGAGTTA GAGCGCGTCA TGCTGGATTT CCAGAAGCAG CACTTCAACG TGTTGTTGTC TACGACGATT ATCGAATCCG GTATTGATAT TCCCAACGCT AACACCATCA TCATCAACCG CGCTGACCGC TTTGGTTTGG CGCAGTTGCA CCAGTTGCGT GGCCGTGTCG GTCGTTCTCA CCATCGCGCC TATGCTTATT TGGTGGTTCC TGACCGGCGC AGCATGACGG CGGATGCAGA GAAACGCTTG GAGGCGATTG CGTCAATGGA CGAGTTGGGT GCGGGCTTTA CTTTGGCGAC CCATGATCTG GAAATACGTG GCGCTGGTGA GTTGCTCGGT GAAGATCAAA GCGGGCAGAT GGCCGAGGTC GGTTTCAGCT TATATACCGA GTTGCTTGAG CGCGCGGTGC GCAGCATCAA GCAAGGTAAA TTGCCAGACC TTGATGCAGG TCAGGAAGAA CGTGGCGCGG AGGTGGATTT GCACATACCC ACGTTGATCC CAGAGGATTA TTTGCCCGAT GTGCATACCC GTTTGACACT CTACAAACGG ATTTCCACGG CCCGTGACAG CAATGCGCTG CGTGAGTTGA ATGTGGAAAT GATTGACCGC TTTGGTGTGC TTCCAGAGAC TGCTAAACAT CTTTTTGCAA TCGCTGAGTT GAAGTTGCAA GCCACTGCAT TGGGTATTTC CAAGTTGGAA TTGGGGGAAA ATGGTGGCCG TATCATATTT GGAGCCAAAC CCATCATTGA TCCTATGGCT GTGATCCAGC TCGTCCAAAA GCAATCCAAA CTGTATTCGA TGGAGGGGCC AAGTAAATTA AAACTCAAGT TGCCTTTGCC GGAACCGGCC GATCGTTTCA ACGCTGCACG AGGGTTGCTT GCTGCGTTGA CACCTTAA
|
Protein sequence | MSPSSFPSPL LPRAGQLRAF WRAPVSPTAL AWHIACAAQA HRGPLLLVTH DNHSAHQIEV DLQTLLAHCS GLPVIGFPDW ETLPYDQFSP DPNIVSQRLA TLHRLPSLAR GIVVVPVQTL MQQLAPLSYI VGGSFDFKVG QRLILDAEKQ RLERAGYRNV PQVMDPGDFT VRGGLLDVYP MGTDVPLRIE LLDEEIDSIR TFDPESQRSL NQVDVIHMLP GREVPLDPAV LERVLVRLRE RFDLDTRRSA LYQDLKAGLA PSGIEYYLPL FFESGRGGKH ATATLFDYLS ADLLVLTAPG VSNAADAFWG QTMQRYEQRR HDIERPLLPP QELYQSPDAL RERLNRLPRI EVWSAEHAHI DKAEVLDEQP LPVATKDVSV GQALRTFLAD YAGRVLIAAT SPGRREVLLE LLATADLQPE VLPDFRSFFL SAAEVSDLGE ANRDSGNGVS GSNDADAAAF HVIASQGGSL PTFAITVAPL EDGFSLSVPP IAVLTERQLF PERVNPVRRS RRVGREPEAI IRDLGELSEG APIVHEDHGV GRYRKLITMN VSGMPGEFVE IEYAKGDRLY VPVAQLHLIS RYSGASPETA PLHSLGGEQW SKAKRKAAEK VRDVAAELLE IQARRQARAG LALRIDRTMY EPFAAGFPFE ETPDQLAAIE TTLRDLQSSQ PMDRVVCGDV GFGKTEVAVR AAFAAASAGK QVAVLVPTTL LAEQHYRNFR DRFADYPIRV EVLSRFKSTK EIKAELQKVS EGTMDVIVGT HRLLQPDVKF KDLGLVIVDE EQRFGVRQKE ALKSLRANVH LLTLTATPIP RTLNMAMAGL RDLSIIATPP LNRLAVQTFI TPWDNALLHE AFQRELARGG QLYFLHNDVE SIGRMQRDLA QLVPEARIGI AHGQMPEREL ERVMLDFQKQ HFNVLLSTTI IESGIDIPNA NTIIINRADR FGLAQLHQLR GRVGRSHHRA YAYLVVPDRR SMTADAEKRL EAIASMDELG AGFTLATHDL EIRGAGELLG EDQSGQMAEV GFSLYTELLE RAVRSIKQGK LPDLDAGQEE RGAEVDLHIP TLIPEDYLPD VHTRLTLYKR ISTARDSNAL RELNVEMIDR FGVLPETAKH LFAIAELKLQ ATALGISKLE LGENGGRIIF GAKPIIDPMA VIQLVQKQSK LYSMEGPSKL KLKLPLPEPA DRFNAARGLL AALTP
|
| |