Gene Xaut_4670 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_4670 
Symbol 
ID5420685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp5167276 
End bp5169870 
Gene Length2595 bp 
Protein Length864 aa 
Translation table11 
GC content70% 
IMG OID640883934 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001419547 
Protein GI154248589 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAAGC CGATCGCTGT ACTTCCTCCG TTCGCCGCCA GCTGGGCTAC GGATGCTGTG 
GTGTTTCTGG ACGAAACCGG CGTCATCACC TTCGTCAATG CGGCCGCGGA GCACCTGTGG
GGCTTGTCTG CCGCCGCCAT GGTCGGCCGC AACGCGCGCG TTGTCTTTCC GGCGGCGCTG
CGCTTCGACC CGGCGCTGCG CTGGACCATG GAGGACATGG TCGGCGCCGA CTGGCAGGTG
GTGATCACCC GCCCGGACGG CTCCAGCGCC TTCGCCCTCG TCCGCCTGGC GCAGGTGTGG
CACGCCGGCA AAGCCGGCTA TGCGGCAGTG GTGCACGCCA TGCCGGACCC CACGGGGGCA
GCCAAGCACA TCAGCATCCT CTCGCTCGTC GCCGAGAAAA CCGATCGCGG CGTGGTCGTC
ACCGATGCGC GGCACCGGAT CGTCTACACG AACCGCGCCT TCCAGGAGAT GCTCGGCTAC
GTCGAGGGCG AGGCCGAAGG GCGCGTGCTG GAGGACCTCT TGGCCACCGG CAAAGGCGCC
ACCGACCTTG CCGCCCGCAT CAGCAGCGGC ATCCAGCGCC GGATGCCGTT CCCGGAAGAC
GTGCCGCTGC GCGGCGCCTC CGGCAACGAG GTGTGGGTCT CCGCCATCGT CACGCCGGTG
CTGAACCAGG TCACCGGCGC GCTCGAGCAC GTGGTCGCCG TGCTGGCGGA CATCACCCAC
GCCCGCCTCA TGGAGGACCT GCAGCGGCAG GTGCTGGCGG CGCTGGCGGC CGACGCGCCG
GCTCGCGACA TTCTCGAGCT GCTGTGCCGC AAGGTGGAGG AACTGGCCCC CGGTGTCCTC
TGCTCGATCA TGGGCGTCAC CGCCGACGAC CGGCTGACGG TGCTGGCCGC CCCCAATCTG
CCAGCCGCAT TCTCGGCCGC GGTGGAGGGC CTGGCCATCG GCCCCAAGTG CGGCAGCTGC
GGCACCTCGG CGTTTCGCGG CGAGGCGGTG ATGGTGGAGG ACATCACCAC GAGCCCGCTG
TGGGAGGATT TCAAGGACCT CGTGCTTCCC CACGGCATCA AGGGCTGCTG GTCCATCCCG
GCCAGGCTGC GCGGCGGCAA GGTAGCCGCG ACCTTCGCCT TCTACTTCCC CGGCCCCCCC
TTCGCCGCGC CCTGGCTCGA AAGCGTGGTC TCGGCCTGCG CCGACCTGTG CGCGCTGGTC
CTCGAGCGCT CGGAAGCGCG CGACCGCATC GCCACCCTTG CCAGCATCGA CGCGCTGACG
GGCCTGCCCA ATCGCCGCCG GCTGATCGAA TCCCTGGGCG ACCTCATCGC CGAGGCGGCC
GAGCGCGACG AACCCCTCGC GGTGATGATG CTCGACGTCG ACCACTTCAA GGACGTGAAC
GAGACCCTCG GCCATTCCAC CGGCGACGAG CTTCTGGTGG AGATGGCACG GCGCCTCCAG
GCGCAGTTGC GCACCGGGGA CACGGTGGGC CGCACCGGCG GCGACGAGTT CGTGGTGGTG
GTGCACGACT GCGCCGCGGA GGAGGCCGCC CGCATCGCCC GCCGCCTCAT CGACTACCTG
AGCGCCCCCA TCCCGGCGCA GAAGCTGCAC CTCACCATGT CGGCGTCGGT GGGCATCGCC
CTTTATCCCC AGCACGGCAC TAGCGCCGAG ACCTTGCTGC GGCACGCCGA CACCGCCATG
TACGAGGCCA AAAGCAAGGC CAGGGGCCGG TTCCAGTTCT TCACCGAGGA TCTGAACAAG
AGGGTGGAGG ATCGCCTGGT GCTGTCCGTC GCCCTGCGCG AGGCGGTGCA GAATCAGGCA
CTGCGCCTCG TCTACCAGCC CCAGGTCACG CTGGCGAAGG TCACGCTATC GAACGACACG
CCATCGAACG GTACGCTTGC GGGCGGCGCG CTGCACGGCG TGGAGGCGCT CGCCCGCTGG
TCGGATCCGG TCCACGGCGA GGTTCCGGCG CCCCGCTTCA TCGCGCTGGC GGAGGAATAC
GGCTTCATCG AGAGCATCGA CCAGTGGGCG GTGGAGGAGG CCTGCCGGCA GATCGCGGTC
TGGCGCGCGG AAGGGGTGGC GGTGCCGCAC GTCTCGGTGA ACCTCTCCCC CCTGAGCTTC
CGCAGCGGCG AGATCGTGGG GATCATCGCC GATGCGCTGG AGCGGCATCG CCTGGCCCCG
AGCGACCTTC GGGTCGAGAT CACCGAGCGG GTGACCATGG ACCAGAACCC GCATTCGTTC
GCCACGGCGC GCGCCATCGA CGCGCTGGGC GTGCGCATCG CCATGGACGA TTTCGGCACC
GGCTATTCCA GCCTCAGCGC CCTGTCGCGC CTGCCCATCG CCGAGCTGAA GATCGACCGC
TCCTTCATGC TGAGCATCGA GCAAGACAAG AATGCCCTCG CCCTGGCCAC GGCGGTGATC
CTCATCGGCC AGAGCCTCGG CATGGCGGTG GTGGCGGAAG GCGTGGAGAC GGCGGCGCAG
GCCGACCTGC TGCGCACCCT CGGCTGCCAT GCCGTCCAGG GCTATTTGTT CGCCCGGCCG
CTGGAGGCGG ACGCCGTCGC CGGCTGGCTT GCCGCCAACG CGCCCTCGCA CACCCCGGAA
CGCGCGGAAC CCTGA
 
Protein sequence
MGKPIAVLPP FAASWATDAV VFLDETGVIT FVNAAAEHLW GLSAAAMVGR NARVVFPAAL 
RFDPALRWTM EDMVGADWQV VITRPDGSSA FALVRLAQVW HAGKAGYAAV VHAMPDPTGA
AKHISILSLV AEKTDRGVVV TDARHRIVYT NRAFQEMLGY VEGEAEGRVL EDLLATGKGA
TDLAARISSG IQRRMPFPED VPLRGASGNE VWVSAIVTPV LNQVTGALEH VVAVLADITH
ARLMEDLQRQ VLAALAADAP ARDILELLCR KVEELAPGVL CSIMGVTADD RLTVLAAPNL
PAAFSAAVEG LAIGPKCGSC GTSAFRGEAV MVEDITTSPL WEDFKDLVLP HGIKGCWSIP
ARLRGGKVAA TFAFYFPGPP FAAPWLESVV SACADLCALV LERSEARDRI ATLASIDALT
GLPNRRRLIE SLGDLIAEAA ERDEPLAVMM LDVDHFKDVN ETLGHSTGDE LLVEMARRLQ
AQLRTGDTVG RTGGDEFVVV VHDCAAEEAA RIARRLIDYL SAPIPAQKLH LTMSASVGIA
LYPQHGTSAE TLLRHADTAM YEAKSKARGR FQFFTEDLNK RVEDRLVLSV ALREAVQNQA
LRLVYQPQVT LAKVTLSNDT PSNGTLAGGA LHGVEALARW SDPVHGEVPA PRFIALAEEY
GFIESIDQWA VEEACRQIAV WRAEGVAVPH VSVNLSPLSF RSGEIVGIIA DALERHRLAP
SDLRVEITER VTMDQNPHSF ATARAIDALG VRIAMDDFGT GYSSLSALSR LPIAELKIDR
SFMLSIEQDK NALALATAVI LIGQSLGMAV VAEGVETAAQ ADLLRTLGCH AVQGYLFARP
LEADAVAGWL AANAPSHTPE RAEP