| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4250 |
|---|
| Symbol | |
|---|
| ID | 5422998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 4715089 |
|---|
| End bp | 4716081 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640883511 |
|---|
| Product | tRNA-dihydrouridine synthase A |
|---|
| Protein accession | YP_001419128 |
|---|
| Protein GI | 154248170 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.270848 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAGT CACAGCCGTT TAGATTTTCA GTCGCCCCCA TGATGGATTG GACCGACCGC
CATTGCCGGG CGTTCCACCG CACTCTTTCG CGCCGGGCGC GGCTCTATAC GGAGATGGTC
ACGGCGCCGG CCATCCTCCA TGGCGATCGC GCGCGCCTGC TCGGGTTCTC GCCGGAGGAG
CACCCGGTGG CGGTTCAGCT GGGCGGCAGC GATCCGGCGG AGCTGGCGCA GGCGGCGCGG
ATCTGCGCCG ATTATGGCTA TGACGAGATC AACCTCAACG TGGGTTGCCC CTCCGACCGG
GTTCAGGGTG GCAATTTTGG CGCCTGCCTC ATGCGCGAGC CAGACCTCGT GGCCGATTGC
GTCGCCGCCA TGAAGGCGGT CGTGGCGATC CCCGTCACCG TCAAGTGCCG CATCGGCGTG
GACGACCAGG ACCCGGAGGA AGCCCTCGAT CGCCTCGCCG ATGCCGTGGT GGCAGCCGGC
ACCGATGCGC TCATCGTCCA TGCCCGCAAG GCGTGGCTGA AGGGCCTGTC GCCGCGCGAG
AACCGCGATA TCCCGCCTCT CGACTATGAC CGGGTTCGCC GGCTGAAGGC CCGCCTGCCC
CACGTGCCCA TCGCGGTGAA TGGCGGCATC GCCAGCATCG CCCAGGGACT GGAGGAGGCG
CGCGGTCTCG ACGGCATGAT GCTGGGTCGC GCCGCCTATC AGGATCCCGA ACTACTGCTC
GGCGTCGATC CGCTACTGTT CGGCACGCCT GCCCCCCATG CAGACGGCTT CGCCGCGGTG
GAGGCCTTCG AGCCCTATGT GGCGCACCAT CTGGAGGCCG GCGGGCGGCT CTCCGACATC
ACCCGCCACA TGCTGGGCCT GTTCACCGGC CGCAAGGGCG CGCGCATCTT CCGCCGCCAT
CTCTCCACCG AGGCCATCCG CCCCGGCGCC GGGCTCGACG TGCTGCGCGC GGCCGTGGAT
GAGGTACGCC GGCGCCAGCC TCTGGCGGCC TGA
|
|---|
| Protein sequence | MMQSQPFRFS VAPMMDWTDR HCRAFHRTLS RRARLYTEMV TAPAILHGDR ARLLGFSPEE
HPVAVQLGGS DPAELAQAAR ICADYGYDEI NLNVGCPSDR VQGGNFGACL MREPDLVADC
VAAMKAVVAI PVTVKCRIGV DDQDPEEALD RLADAVVAAG TDALIVHARK AWLKGLSPRE
NRDIPPLDYD RVRRLKARLP HVPIAVNGGI ASIAQGLEEA RGLDGMMLGR AAYQDPELLL
GVDPLLFGTP APHADGFAAV EAFEPYVAHH LEAGGRLSDI TRHMLGLFTG RKGARIFRRH
LSTEAIRPGA GLDVLRAAVD EVRRRQPLAA
|
|---|
| |