| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4166 |
|---|
| Symbol | |
|---|
| ID | 5421229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 4608130 |
|---|
| End bp | 4609413 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640883422 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001419044 |
|---|
| Protein GI | 154248086 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAC AGGTATCCGG CCGTGCCGAA TCGCCTCCGG CAGCCGTACG TCGCAGCTGG
CGTTCAACGG TGATTCTCAC CGTCGTTGCG CTGGCGGCCA TTGGTGGCCT CGGCGCCCTG
TATTGGCGCG GGCCGGGCTC CGCCCCGGCA GGTCCGGGGG GCCGGATGCC GCCGCCGCAG
GCCAGCGTTT CCGTAGGAAC GGTGGAGCGC GGTGACATCA CGGTCACGGT CCAGGCGCTG
GGCACGGTCA CCTCCACGTC CACCGTGACG GTGCGGCCGC AGGTCAGCGG GCAGCTGCTG
AGCGTGAATT TCAAGGAAGG CCAGAGCGTC AAGCGCGGCG ACCTCATCGC CCAGATCGAT
CCGCGGCCGT TCCAGGCCAC CCTTGACCAG GCCAAGGCCC AGGTGGACCG CGACCAGGCC
CTGCTGGAAG GCGCCAAGGT GGATCTCCAG CGCTACCAGG GCCTATCGGC GCAGAACGCG
GTGCCGCGCC AGACCCTCGA CACCCAGAAG GCGCTCGTGG CGCAGTACAC GGCGACCATC
GAGGCGGACA AGGCGCAGCT CCAGACCGCC GCCATCAACC TCGATTTCAC GCAGATCCGC
GCCCCGGTGG ACGGGCGGGC CGGATTGCGC CTCGTGGACC AGGGCAATTA CGTCACACCC
GGCGACACCA GCGGCATCAC CGTGCTGACC CAGCTCCAGC CCATCAGCGT GGTGTTTTCC
GTGCCGGAGG ACCGGTTGGC GGAGATTTCC CGGCGCCTCA AGGCCGGCGC GAAACTGGCG
GTGCATGCTT TCGACCGCAC CGGTCAGAAC AGGATCGCCG AAGGGGTGCT GGAGACCTTC
GACAGCCAGA TCGACCAGAC CACGGGCACC ATCAAGCTGC GCGCCAGCTT CCCCAACGAG
GACCAGCGGC TCTACCCGAA CCAGTTCGTC AACGTGACGC TGGATGTGGA CACCCATTCG
GGCGTCGCCA TCGCCCCGAC ATCCGGGATT CAGCGCGGCG TGCCGGGGAC TTTCGCCTAT
CTGCTCAATG CGGACCAGAC GGTGTCGGTG CGGCCCATCA CCCTCGGCGT CACCACGGGC
GAGAAGGTGG AGATCCTCTC CGGCCTCGCG CCCGGCGACC AGATCGTGGT GGAGGGGGCC
GACCGGTTGC GCGACGGGGC CCATGTGACG GTGCGCCCGG GAGCGGCTCG ATCGCCGCCC
GCCGCCGGTG CCCCGCCGGC GCGGCCGGGT GGCCAACCTG AGGCGCATCA GGGCCGCCAG
CCGGACCGCG CGGCAGCGCA ATGA
|
|---|
| Protein sequence | MDKQVSGRAE SPPAAVRRSW RSTVILTVVA LAAIGGLGAL YWRGPGSAPA GPGGRMPPPQ
ASVSVGTVER GDITVTVQAL GTVTSTSTVT VRPQVSGQLL SVNFKEGQSV KRGDLIAQID
PRPFQATLDQ AKAQVDRDQA LLEGAKVDLQ RYQGLSAQNA VPRQTLDTQK ALVAQYTATI
EADKAQLQTA AINLDFTQIR APVDGRAGLR LVDQGNYVTP GDTSGITVLT QLQPISVVFS
VPEDRLAEIS RRLKAGAKLA VHAFDRTGQN RIAEGVLETF DSQIDQTTGT IKLRASFPNE
DQRLYPNQFV NVTLDVDTHS GVAIAPTSGI QRGVPGTFAY LLNADQTVSV RPITLGVTTG
EKVEILSGLA PGDQIVVEGA DRLRDGAHVT VRPGAARSPP AAGAPPARPG GQPEAHQGRQ
PDRAAAQ
|
|---|
| |