Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xaut_4007 |
Symbol | |
ID | 5423148 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthobacter autotrophicus Py2 |
Kingdom | Bacteria |
Replicon accession | NC_009720 |
Strand | - |
Start bp | 4434900 |
End bp | 4436879 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640883261 |
Product | conjugal transfer coupling protein TraG |
Protein accession | YP_001418886 |
Protein GI | 154247928 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.521585 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCGCGA CCAAGATCCT CTGGGGCCAG ATCCTCGCAG TCTTCGCCAT CGTGCTCGCC ACCACCTGGG GGGCGACGGA ATATGTCGCC TGGCGGCTGG GCTTCCAGGA CCAACTCGGC TCACCCTGGT TCGTGCTGGG GTACTGGCCC GTCTATCACC CGCCGGCCTT CTTCTGGTGG TGGTATTTCT ACGATGCCTA TGCGCCGGAG ATTTTCACAG AAGGCGCCTT CATCGCGGCC TCGGGCGGGT TCCTGTCCAT TGCGATCGCC ATCGGCCTGT CGGTCTGGCG GGCCCGGGAG GCGAAGCGGG TCGAGACCTA CGGTTCCGCC CGCTGGGCCG AGCCGGACGA GATCCGTTCA GCCGGTCTTC TCGGATCCGA CGGGGTAGTG CTCGGCCGCC ATGGAGGGGA CTATCTGCGC CATGACGGGC CCGAGCACGT CCTGTGCTTC GCGCCCACCC GGTCGGGCAA GGGCGTGGGC CTCGTCGTCC CATCGCTCCT CACCTGGCCA GGCTCTGCCA TCGTCCACGA CATCAAGGGC GAAAACTGGC AGCTCACCGC CGGCTTCCGG GCACGGCACG GGCGCGTGTT GCTGTTCGAC CCCACCAATG TGAAATCGGC CGCTTACAAT CCGCTGCTGG AGGTCCGCCG CGGGGAGTGG GAGGTCCGCG ACGTCCAGAA CATCGCCGAT ATCCTGGTCG ACCCTGAGGG CTCACTGGAA AAGCGCAACC ACTGGGAAAA GACCAGCCAC GCTCTGCTCG TCGGCGCCAT TCTCCATGTG CTCTATGCCG AGCGCGACAA GACCCTCGCC GGCGTCGCCG TCTTCCTCTC CGACCCCAGG CGCCCCATCG AGGCGACACT CGCCGCCATG ATGACGACGC CGCACCTCGG CGAGACGGGT CCTCATCCGG TGATCGCCAG CGCGGCACGG GAGCTTCTCA ATAAGTCGGA GAACGAGCGC TCCGGCGTTC TTTCCACCGC CATGTCCTTC CTCGGGCTCT ATCGCGATCC GGTGGTCGCC AAGGTGACCC GGCGCTGCGA TTGGCGCATC GCCGACCTTG TAGCGCACCG GCAGCCGACC ACCCTCTATC TCGTCGTGCC GCCGTCCGAC ATCAACCGCA CCAAGCCTCT GATCCGCCTG ATCCTGAACC AGGTCGGGCG TCGCCTCACC GAGGACCTGC AGGCGAAGGC CGGCCGCCAT CGGCTCCTCC TGATGCTGGA CGAGTTTCCG GCGCTGGGGC GGCTCGACTT CTTCGAGAGC GCCCTCGCAT TCATGGCGGG CTACGAGCTC AAGAGCTTCC TGATCGCGCA GAGCCTGAAC CAGATCGAGA AGGCCTATGG CCCGAACAAT TCGATCCTCG ACAACTGCCA TGTGCGGGTG AGCTTTGCCA CCAATGACGA GCGCACCGCC AAGCGTGTCT CCGACGCCCT CGGCACCGCC ACCGAGATGA AGGCCATGAA GAACTATGCC GGCCACCGGC TCTCGCCCTG GCTCGGCCAC CTGATGGTGT CGCGCTCGGA GACGGCCCGC CCGCTCCTCA CGCCGGGTGA GGTGATGCAG CTTCCACCCG CCGACGAGAT CGTCATGGTC GCCGGCACGC CGCCGATCCG GGCGAAGAAG GCGCGGTACT ATGAGGATGC GCGCTTCCGG GAGCGAATCC TGCAGCCACC TCTGCTTGCA GAACCCAACG AGCAGCGCGC CGACGACTGG ACCGTGTTGC CGTTGCCCGC ACCCTCGCAA CTGAGCCTGA TGGTGCAGGG AAGGGATGAT GAGGACACGA CCGGGTCGGA GCGCCGACAC CAGCCGGAGC TGGCTCGGGT GGCTTCGGTC GAGGAGCTTG CATTACCGCA GAACGAGTTC GAGATCGACC TCGCGGACGA GAGTGAGGAC GACGTCGCCC GAAACAGCCG CATGACGCGC GTCATGCAGG GTGTGGCGCG TCAGGTCTCG CTCGACCCCC GCGACGGCAT GGAGCTGTGA
|
Protein sequence | MSATKILWGQ ILAVFAIVLA TTWGATEYVA WRLGFQDQLG SPWFVLGYWP VYHPPAFFWW WYFYDAYAPE IFTEGAFIAA SGGFLSIAIA IGLSVWRARE AKRVETYGSA RWAEPDEIRS AGLLGSDGVV LGRHGGDYLR HDGPEHVLCF APTRSGKGVG LVVPSLLTWP GSAIVHDIKG ENWQLTAGFR ARHGRVLLFD PTNVKSAAYN PLLEVRRGEW EVRDVQNIAD ILVDPEGSLE KRNHWEKTSH ALLVGAILHV LYAERDKTLA GVAVFLSDPR RPIEATLAAM MTTPHLGETG PHPVIASAAR ELLNKSENER SGVLSTAMSF LGLYRDPVVA KVTRRCDWRI ADLVAHRQPT TLYLVVPPSD INRTKPLIRL ILNQVGRRLT EDLQAKAGRH RLLLMLDEFP ALGRLDFFES ALAFMAGYEL KSFLIAQSLN QIEKAYGPNN SILDNCHVRV SFATNDERTA KRVSDALGTA TEMKAMKNYA GHRLSPWLGH LMVSRSETAR PLLTPGEVMQ LPPADEIVMV AGTPPIRAKK ARYYEDARFR ERILQPPLLA EPNEQRADDW TVLPLPAPSQ LSLMVQGRDD EDTTGSERRH QPELARVASV EELALPQNEF EIDLADESED DVARNSRMTR VMQGVARQVS LDPRDGMEL
|
| |