| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_3864 |
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| Symbol | |
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| ID | 5420845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | - |
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| Start bp | 4279815 |
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| End bp | 4282145 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640883120 |
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| Product | ribonuclease R |
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| Protein accession | YP_001418745 |
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| Protein GI | 154247787 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACGA AAGAGCAGGT GCTGGCCTTC ATCGCCACCC AGAGCGGCGA AGTGGGCAAG
CGCGAGATCG CCCGCGCCTT CGGCCTCAAC GCGGCGCAGA AGATCGAGCT GAAGAGCCTG
CTGCGCGACC TCGCCGACAC CGGAACGGTG GAGCGCAGCC GCCGCCGGCT GCACGTGCCC
GGCGCCCTGC CCGGCGTGGT GCTGGCCGAC ATCGTCTCCC GCGATGGCGA CGGCGAGCTG
ATCGCCGTGC CGGTGGAGTG GGATACCGAG ACCCAGGGCG ACGCGCCGCC CATCCTTGTC
CAGGTGCCGC GCCGCGCCGT GGGCCCCGCC CCCGGCCTGG CCGACCGGGT GCTGCTGCGC
ATCGTGGAAG GCTCCATCGA GCATGGCGTT GCCCATGTGG GCCGCGTCAT CAAGGTGCTG
GAGAAGGCGC GCAGGCAGAC CATCGGCATC TTCCGTGCCG CCCCCGGCGG GGAAGGCGGC
GGGCGCATCA TCCCCATCGA CAAGAAGCAG CTCGGCCGCG AGCTTCAGGT GCCCCCAGGC
GCCGAGCACG AGGCCAGGGA TGGCGACCTC GTCACCGTCG AATTGATGCG CCAGCGGGTG
TTCGGCCTGC CCACCGCGCG GGTGAAGGAA AAGCTGGGTT CGCTGAGCTC CGAGAAGGCG
GTGAGCCTGA TCGCGCTGCA CGCCCACGCC ATCCCCCACG TCTTCCCCGA GGCGGTGCTG
AAGGAGGCCG AGGCGGCAAA ACCCGTCACC CCGCGCGGCC GCGAGGACTG GCGCGATGTG
CCCCTCGTCA CCATCGACCC ACCCGACGCC AAGGACCATG ACGATGCCGT CCACGCCGTG
GCCGACGACG ATCCGGCCAA CGACGGCGGC TTCATCGTCA CGGTCGCTAT CGCCGATGTG
TCGGCCTATG TGCGTCCCGG CTCGCCGCTG GACCGCGAGG CGCTGATCCG CGGCAATTCG
GTGTATTTCC CGGACCGCGT GGTGCCCATG CTGCCGGAGC GCATCTCCAA CGACCTGTGC
TCGCTGCGCC CGAAGGAGGA CCGCCCGGCG CTGGCGGTGC GCATGATCAT CGGCGCGGAC
GGCAGGAAGC GCCACCACAC CTTCCACCGC ATCCTCATGC GCTCGGCGGG CAAGCTCGCC
TATGCCCAGG CCCAGAACGC CATCGAGGGC CGCACCGACG ACACCACCGA CCCGCTGCTC
AACGGCGTGC TGAAGCCGCT CTACGCCGCC TATGACTGCG TGAAGAAAGC CCGCGACGCC
CGCCAGCCCC TCGACCTCGA CCTGCCCGAG CGCAAGATCG TGCTGAAGGA AGACGGCACC
GTGGACCGCG TGGTGGTGCC GGAGCGGCTC GACGCCCACC GGCTCATCGA GGAGTTCATG
ATCCTCGCCA ATGTGGCCGC CGCCGAGACG CTGGAGGAGA AGAAGACCCC CCTCATCTAC
CGCGTCCATG ACGGCCCCTC GCTGGAGAAG CTCTCCAACC TGCGGGAATT CCTGAAGACC
CTGGACATCG CCCTGGCCAA GATCGACCAG GTGCGGCCCT CCCACTTCAA CCGCATCCTG
GCGCAGGTGA AGGACACCGA CGCGGCGCCG TTGGTCAACC AGGTGATCCT GCGCAGCCAG
AGCCAGGCGG AATATGCCTC GGAGAATTAC GGGCATTTCG GCCTGAACCT GCGCCGCTAC
GCCCATTTCA CCTCGCCGAT CCGCCGCTAT GCGGATCTGG TGGTGCATCG CGGCCTGGTG
CGGGCCATGG ATTTCGGCTC CGACGGCCTG CCTCCCGACG CGACCACCGC GACGCTGGGC
GAAGTGGCAG CCGCCATCTC CGTCACCGAG CGCCGCGCCA TGGCGGCCGA ACGGGAGACC
GTGGACCGGC TCATCGCCCA TCATCTGGCC GACCAGATCG GCGCCACCTT CAACGCCCGC
ATCACCGGGG CCACCAAGGC GGGACTCTTC GTCGCGCTCG ACATTACCGG GGCAGATGGC
TTCATTCCGG CCTCAACGCT GGGGCAGGAT TATTATCGCT ACGACGAAAC CCGGCAGGCC
CTGGTGGGCG AGCGGAGCGG CGAAATGCAC CGCATCGGCG ACCGGGTGGA GGTCAAGCTG
GTGGAGGCGG CGCCGGTGGC CGGCGCCCTG CGGTTTGAGC TTCTGACGGA AGGCTCCTAT
GTAAAGGGGC CGCGCGGGCG TCCCGGCCCG CTCCGGCGGG GCGGTGCCAA GGGTGGCGCG
CCAAAGGGCG GCTTTCCGAA AGGCGGCGCC CGGCAGGGTC CGGCCGGACG GCATGCCGGC
AGCGGTCATC CGGGCAAAGG CCCGCAGGGA AAGGGACGGT CGCGCCCGTA A
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| Protein sequence | MPTKEQVLAF IATQSGEVGK REIARAFGLN AAQKIELKSL LRDLADTGTV ERSRRRLHVP
GALPGVVLAD IVSRDGDGEL IAVPVEWDTE TQGDAPPILV QVPRRAVGPA PGLADRVLLR
IVEGSIEHGV AHVGRVIKVL EKARRQTIGI FRAAPGGEGG GRIIPIDKKQ LGRELQVPPG
AEHEARDGDL VTVELMRQRV FGLPTARVKE KLGSLSSEKA VSLIALHAHA IPHVFPEAVL
KEAEAAKPVT PRGREDWRDV PLVTIDPPDA KDHDDAVHAV ADDDPANDGG FIVTVAIADV
SAYVRPGSPL DREALIRGNS VYFPDRVVPM LPERISNDLC SLRPKEDRPA LAVRMIIGAD
GRKRHHTFHR ILMRSAGKLA YAQAQNAIEG RTDDTTDPLL NGVLKPLYAA YDCVKKARDA
RQPLDLDLPE RKIVLKEDGT VDRVVVPERL DAHRLIEEFM ILANVAAAET LEEKKTPLIY
RVHDGPSLEK LSNLREFLKT LDIALAKIDQ VRPSHFNRIL AQVKDTDAAP LVNQVILRSQ
SQAEYASENY GHFGLNLRRY AHFTSPIRRY ADLVVHRGLV RAMDFGSDGL PPDATTATLG
EVAAAISVTE RRAMAAERET VDRLIAHHLA DQIGATFNAR ITGATKAGLF VALDITGADG
FIPASTLGQD YYRYDETRQA LVGERSGEMH RIGDRVEVKL VEAAPVAGAL RFELLTEGSY
VKGPRGRPGP LRRGGAKGGA PKGGFPKGGA RQGPAGRHAG SGHPGKGPQG KGRSRP
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