Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xaut_3364 |
Symbol | rpoB |
ID | 5423193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthobacter autotrophicus Py2 |
Kingdom | Bacteria |
Replicon accession | NC_009720 |
Strand | + |
Start bp | 3743884 |
End bp | 3747960 |
Gene Length | 4077 bp |
Protein Length | 1358 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640882617 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001418250 |
Protein GI | 154247292 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.209145 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCAAA CGTTCACCGG TCGTAAGCGG ATCCGCAAGT TCTTCGGCAA GATCAAGGAA GTGGCCGAGA TGCCGAACCT CATCGAGGTT CAGAAGGCAT CCTACGACCA GTTCCTCCAG ATCGAGGAAC CCAAGGGCGG ACGCGACGAC GACGGCCTGC AGGCGGTGTT CAAGTCGGTG TTCCCCATCT CCGACTTCTC CGGCGCCTCC ATGCTGGAGT TCGTGCGCTA CGAGTTCGAG CCCCCCAAGT ATGACGTGGA CGAGTGCCGC CAGCGCGGCA TGACCTTTGC TGCCCCGCTC AAGGTGACCC TGCGCCTCAT CGTGTTCGAT GTGGATCCCG AAACCGGCGC CAAGTCGGTG AAGGACATCA AGGAGCAGGA CGTCTACACC GGCGACATCC CGCTCATGAC CATGAACGGC ACGTTCATCG TGAACGGCAC CGAGCGCGTC ATCGTCTCCC AGATGCACCG TTCGCCGGGC GTGTTCTTCG ACCACGACAA GGGCAAGACC CACTCCTCGG GCAAGCTCCT GTTCGCCGCC CGCATCATTC CCTATCGCGG CTCCTGGCTC GACATCGAGT TCGACGCCAA GGACATCGTG TTCGCCCGCA TCGACCGGCG CCGGAAGATC CCGGTGACGA GCCTGCTCTA TGCCCTCGGC CTCGACAACG AGGAGATCCT CTCGACCTTC TACGAGAAGA TCCCCTTCAC GCGGGAGAAG GGCGGCTGGC GCATGCCGTT CGATCCCAAG CGCATGAAGG GCTACAAGGC GGTCGCCGAC CTGATCGACG CCGACACCGG CGAAGTCGTG CTCGAGGCCG GCAAGAAGCT GACCGTCCGC GCCGGCCGCC AGCTGGCCGA GAAGGGCCTC AAGGCCCTCA AGATCTCCGA CGAGGAGATG ATCGGCCAGT ACATCGCCGA GGACCTGGTG GATCTCACCT CGGGCGAGAT CCACGCCGAG GCGGGCGAGG AAATCACCGA GAAGACGCTG AAGCTGCTCG AAGAGACCGG CTACAACGAA ATCCCGGTGC TGGACATCGA CCACGTCAAC ACCGGCGCCT ACATCCGCAA CACGCTGACC GCCGACAAGA ACGTGACCCG CGAGGACGCG CTCTTCGACA TCTACCGCGT GATGCGCCCG GGCGAGCCGC CGACGCTGGA TTCGGCGCAG GCCATGTTCC ACTCGCTGTT CTTCGACAGC GAGCGCTACG ACCTGTCCGC GGTCGGCCGC GTGAAGATGA ACATGCGCCT CGACCTCGAC TGCCCCGACA CGGTGCGGGT GCTGCGCCGC GACGACATCC TCTCGGTCAT CCGCACGCTG GTTGAGCTGC GCGACGGCAA GGGCGAGATC GACGACATCG ACCACCTGGG CAACCGCCGC GTGCGCTCGG TGGGCGAGCT CATGGAGAAC CAGTACCGCG TCGGCCTGCT GCGCATGGAG CGCGCCATCA AGGAACGCAT GTCCTCCGTG GACATCGACA CCGTGATGCC GCAGGACCTC ATCAACGCCA AGCCGGTGGC GGCGGCGGTG CGCGAGTTCT TCGGCTCGTC CCAGCTCTCG CAGTTCATGG ACCAGACCAA CCCGCTTTCC GAGATCACGC ACAAGCGGCG TCTCTCGGCG CTTGGCCCGG GCGGTCTGAC CCGTGAGCGC GCCGGCTTCG AGGTGCGCGA CGTGCACCCG ACCCACTACG GCCGCATCTG CCCCATCGAG ACGCCGGAAG GCCCGAACAT CGGCCTCATC AACTCGCTGG CCACCTTCGC CCGCGTGAAC AAGTACGGCT TCATCGAGGC GCCTTACCGC CGCGTGGTGG ATTCGAAGGT CACCGACGAG GTGGTCTATC TCTCCGCCAT GGAGGAGGGG AAGTATTACG TCGCGCAGGC CAACATCCCG CTCGACAAGG ACGGCCGCTT CGAGGAAGAC CTCATCGTCT GCCGCCATGC GGGCGACGTG CTCCTGGTCG CCCCCGACCG CGTCGACTTC ATGGACGTGT CCCCCAAGCA GCTGGTCTCG GTGGCCGCGG CGCTGATCCC GTTCCTTGAG AACGACGACG CCAACCGCGC GCTCATGGGC TCCAACATGC AGCGCCAGGC GGTGCCGCTG GTGCGCTCGC AGGCGCCGCT GGTGGGCACC GGCATGGAAG CCGTGGTGGC CCGGGATTCG GGCGCCGCCA TCGCCGCCCG CCGCACCGGC GTGATCGACC AGGTGGACGC CACCCGTATC GTCATCCGCG CCACGGAAGA GGCCGATCCG TCCAAGTCGG GCGTCGACAT CTACCGGCTG ATGAAGTTCC AGCGCTCCAA CCAGTCCACC TGCATCAACC AGCGTCCGCT GGTGCGCGTG GGTGACCAGG TGAAGAAGGG CGACATCATC GCCGACGGTC CCTCGACCGA GCTCGGCGAA CTGGCGCTCG GCCGGAACGT GCTCGTCGCG TTCATGCCGT GGAACGGCTA CAACTTCGAA GATTCGATCC TGCTCTCGGA GAACATCGCC AAGGAGGACG TGTTCACCTC GATCCACATC GAGGAATTCG AGGCCATGGC CCGTGACACC AAGCTCGGGC CGGAGGAAAT CACCCGCGAC ATTCCCAACG TCTCGGAAGA GGCGCTGAAG AATCTCGACG AGGCGGGCAT CGTCTATATC GGCGCGGAAG TGCGCGCCGG CGACATCCTC GTGGGCAAGA TCACGCCCAA GGGCGAAAGC CCGATGACGC CGGAAGAAAA GCTGCTGCGC GCCATCTTCG GCGAGAAGGC CGCCGACGTG CGCGACACCT CGCTGCGCCT GCCGCCCGGC ACCACCGGCA CCATCGTGGA AGTGCGCGTG TTCAACCGCC ACGGCGTGGA CAAGGACGAG CGTGCCCTGG CCATCGAGCG GGAAGAGATC GAGCGTCTCG CCAAGGACCG TGACGACGAG CAGGCGATCC TGGATCGTAA CGTCTACGGC CGCCTGATCG AGATCCTCGA CGGCAAGACC GCCATCGCCG GCCCGAAGGG CTTCCGGAAG GAGACCGTGG TCACCCGCGA GATCCTCACC GAATACCCGC GCTCGCAGTG GTGGCTGTTC GCGGTGGCCG ACGACGCCAT CATGGCGGAG CTGGAAGCCA TCCGCGCCCA GTATGACGAC TCTAAGAAGC GTCTGGAGCA GCGGTTCCTC GACAAGGTCG AGAAGCTGCA GCGCGGCGAC GAACTGCCCC CCGGCGTGAT GAAGATGGTC AAGGTCTTCG TCGCGGTGAA GCGCAAGATC CAGCCCGGCG ACAAGATGGC CGGCCGCCAT GGCAACAAGG GCGTGGTCTC GCGCATCGTG CCCGTGGAGG ACATGCCGTT CCTCGAGGAC GGCACCAACG TGGACATCGT GCTGAACCCG CTGGGCGTGC CCTCGCGCAT GAACGTCGGG CAGATCCTGG AGACGCACCT GGGCTGGGCC TGCGCGGGCC TCGGCCGGCA GGTGGCCGCG GCGATGGAAG CCTATTACGG CAAGCAGGAC CTCAAGCCCC TGCGCGATCG CCTTGAGACC ATCTACGGCA AGGACGAGAT CGAGCAGCTC AAGGACGGTG AACTGCCCGA GCTGGGCGAG AACCTGCGCA AGGGCGTGCC CATGGCCACC CCGGTGTTCG ACGGGGCGCA CGAGGCCGAC ATCGAGCAGC AGCTGGAAAA GGCGGGCCTT GATGCCTCCG GCCAGTCCAC GCTCTATGAC GGGCGCACCG GCGAGCCGTT CGATCGTAAG GTCACGGTGG GCTACATCTA CATGCTGAAG CTCCACCATC TGGTCGACGA CAAGATCCAC GCCCGCTCCA TCGGCCCCTA CTCGCTGGTC ACCCAGCAGC CCCTGGGCGG CAAGGCGCAG TTCGGCGGCC AGCGCTTCGG CGAAATGGAA GTGTGGGCGC TCGAAGCCTA CGGCGCGGCC TACACCCTGC AGGAGATGCT GACGGTGAAG TCCGACGACG TGGCCGGCCG CACCAAGGTC TACGAGGCCA TCGTGCGCGG CGAGGACACG TTCGAGAGCG GCATTCCCGA GAGCTTCAAC GTGCTCGTGA AGGAAATGCG CTCCCTCGGC CTCAACGTCG ACCTCGAGAA CAGCTGA
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Protein sequence | MAQTFTGRKR IRKFFGKIKE VAEMPNLIEV QKASYDQFLQ IEEPKGGRDD DGLQAVFKSV FPISDFSGAS MLEFVRYEFE PPKYDVDECR QRGMTFAAPL KVTLRLIVFD VDPETGAKSV KDIKEQDVYT GDIPLMTMNG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAA RIIPYRGSWL DIEFDAKDIV FARIDRRRKI PVTSLLYALG LDNEEILSTF YEKIPFTREK GGWRMPFDPK RMKGYKAVAD LIDADTGEVV LEAGKKLTVR AGRQLAEKGL KALKISDEEM IGQYIAEDLV DLTSGEIHAE AGEEITEKTL KLLEETGYNE IPVLDIDHVN TGAYIRNTLT ADKNVTREDA LFDIYRVMRP GEPPTLDSAQ AMFHSLFFDS ERYDLSAVGR VKMNMRLDLD CPDTVRVLRR DDILSVIRTL VELRDGKGEI DDIDHLGNRR VRSVGELMEN QYRVGLLRME RAIKERMSSV DIDTVMPQDL INAKPVAAAV REFFGSSQLS QFMDQTNPLS EITHKRRLSA LGPGGLTRER AGFEVRDVHP THYGRICPIE TPEGPNIGLI NSLATFARVN KYGFIEAPYR RVVDSKVTDE VVYLSAMEEG KYYVAQANIP LDKDGRFEED LIVCRHAGDV LLVAPDRVDF MDVSPKQLVS VAAALIPFLE NDDANRALMG SNMQRQAVPL VRSQAPLVGT GMEAVVARDS GAAIAARRTG VIDQVDATRI VIRATEEADP SKSGVDIYRL MKFQRSNQST CINQRPLVRV GDQVKKGDII ADGPSTELGE LALGRNVLVA FMPWNGYNFE DSILLSENIA KEDVFTSIHI EEFEAMARDT KLGPEEITRD IPNVSEEALK NLDEAGIVYI GAEVRAGDIL VGKITPKGES PMTPEEKLLR AIFGEKAADV RDTSLRLPPG TTGTIVEVRV FNRHGVDKDE RALAIEREEI ERLAKDRDDE QAILDRNVYG RLIEILDGKT AIAGPKGFRK ETVVTREILT EYPRSQWWLF AVADDAIMAE LEAIRAQYDD SKKRLEQRFL DKVEKLQRGD ELPPGVMKMV KVFVAVKRKI QPGDKMAGRH GNKGVVSRIV PVEDMPFLED GTNVDIVLNP LGVPSRMNVG QILETHLGWA CAGLGRQVAA AMEAYYGKQD LKPLRDRLET IYGKDEIEQL KDGELPELGE NLRKGVPMAT PVFDGAHEAD IEQQLEKAGL DASGQSTLYD GRTGEPFDRK VTVGYIYMLK LHHLVDDKIH ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA YTLQEMLTVK SDDVAGRTKV YEAIVRGEDT FESGIPESFN VLVKEMRSLG LNVDLENS
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