| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2884 |
|---|
| Symbol | |
|---|
| ID | 5422332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 3209035 |
|---|
| End bp | 3210387 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640882138 |
|---|
| Product | conjugal transfer protein TrbL |
|---|
| Protein accession | YP_001417780 |
|---|
| Protein GI | 154246822 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
|---|
| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.923893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0750106 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGCA CCGGCGTCAT CGACCAGTTC CTCGGCGTAT TCACCAGCTA CATCGATAGC
GGCTTCGGCC TGCTCGGCGG CGAGGTGGCG TTCATCGCAA CCACGCTGAT CGTCATCGAC
GTGACATTGG CCGCGCTGTT CTGGAGCTGG GGCGCCGACG ACGACATCAT GGCGCGCCTG
GTCAAGAAGA CGCTGTTCGT CGGCGTCTTC GCCTACATCA TCGGCAACTG GAACAACCTC
GCGCGCATCG TGTTCGAAAG CTTCGCCGGG CTCGGCCTGA AGGCGTCGGG CACGGGATTT
ACCGTCGACG ATCTCATGCG TCCCGGCCGT GTTGCGCAGA CCGGCCTCGA CGCCGGCCGG
CCGCTGCTCG ATTCCATCTC CAACCTGATG GGCTGGATCG CCTTCTTCGA GAACTTCATC
CAGATCGCCT GTCTGTTGTT CGCCTGGGCG CTGGTGCTGC TCGCCTTCTT CATTCTCGCC
GTCCAGCTCT TCGTCACCCT GATCGAGTTC AAGCTGACGA CGCTCGCCGG CTTCGTGCTG
ATCCCGTTCG GCCTGTTCGG CAAATCCGCG TTCATGGCCG AGCGCGTCCT CGGCAACGTC
ATCTCGAGCG GCATCAAGGT GCTGGTCCTC GCCGTCATCA TCGGCATCGG CTCGACGTTG
TTCTCTCAAT TCACCGCCGG GTTCGCTGGC CAGACGCCCA CGATCGACCA GGCCATGGCG
ATCGTGCTCG CCGCACTGTC GCTGCTGGGT CTCGGCATCT TCGGTCCCGG TATCGCCAAC
GGCCTCGTCT CGGGTGGTCC GCAGCTCGGC GCCGGCGCCG CGGTCGGCAC CGGACTCGCG
GCGGGCGGCA TAGTGGCGGC GGGCGCTGCG ACTGTTGGGG CCGTGGCATC TGGCGGCGGC
GCCCTTGCTG GAGGAGCCGC CGCCGCCGCC CGTGGCGGTG CGGCGATGGC GGGCGGCGCT
TCGACCGCTT ACAGCCTTGG CGCCGCTGGC CAGTCGGGCG CCGCAGGCGT GGCGTCAGGC
TTGGGCGGGG TCGCACGCGC AGCCGGCGGC GCGGCGGCTT CGCCCCTCCG CCGGACGGCC
TCGCGCGCCG CCGATAGCAT GAAGTCGAGC TTCTCCGAAG GCGCCAAGTC CGCGTTCGCC
GCCACCGGCG GCACATCGAC CATGGGTACG ATCGGCGGAA GCGCGGCCGA GGCTGCGCCA
TCGCAGGCTG CTGACGGGCC GCCGGCCTGG GCCCGCCGCA TGAAGCGTTC TCAAGCCCTG
AGCCACGGTG TGACCGCGGC CGCCCATGCC GTGCGCAGCG GCGACAGCCA TGGCGGCGGC
TCTTCCATCA ATCTCTCCGA AGGCGATCGC TGA
|
|---|
| Protein sequence | MGGTGVIDQF LGVFTSYIDS GFGLLGGEVA FIATTLIVID VTLAALFWSW GADDDIMARL
VKKTLFVGVF AYIIGNWNNL ARIVFESFAG LGLKASGTGF TVDDLMRPGR VAQTGLDAGR
PLLDSISNLM GWIAFFENFI QIACLLFAWA LVLLAFFILA VQLFVTLIEF KLTTLAGFVL
IPFGLFGKSA FMAERVLGNV ISSGIKVLVL AVIIGIGSTL FSQFTAGFAG QTPTIDQAMA
IVLAALSLLG LGIFGPGIAN GLVSGGPQLG AGAAVGTGLA AGGIVAAGAA TVGAVASGGG
ALAGGAAAAA RGGAAMAGGA STAYSLGAAG QSGAAGVASG LGGVARAAGG AAASPLRRTA
SRAADSMKSS FSEGAKSAFA ATGGTSTMGT IGGSAAEAAP SQAADGPPAW ARRMKRSQAL
SHGVTAAAHA VRSGDSHGGG SSINLSEGDR
|
|---|
| |