| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2633 |
|---|
| Symbol | |
|---|
| ID | 5422274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 2922175 |
|---|
| End bp | 2924064 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640881887 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001417532 |
|---|
| Protein GI | 154246574 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.350381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.525149 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGT CGCGCCGCAC GCTGCTGCTG TCCGCCGCCT CCGCCGTCAC CTTGCTGCCG
GCCATGGCAC GTGGGCAGCC GGCGCCGCAG GACGCGGCGG CGAACGAGGG CGCGGCCGCC
TCCGCCGCGG TGGAGCGGCA CGGCCTGTCC TTCTTCGGCG ACCTGCGGTA TCCGGCCGGC
TTCACCCATT TCGACTATGT GGACCCGGAC GCGCCCAAGG GCGGTCCCTT CTCCCAGATG
GGCCGGGCGA CCTTCTACAA CCAGTCGCTC AACACCTTCG ACACGCTGAA CCCCTACAAC
CAGCGCGGCA ACGGCGCCCA GGGCATCGAG CTGATCTACG ATACGCTGAT GACCGCCGCC
GGCGACGAGA AGAGCGCCAT GTACGGCCGC CTCGCCAGCT CGGTGGTGAT CGCCGACGAG
GGGCTCACCT ACCGCTTCAA GCTGCGCCCG CAGGCGCGCT TCCATGACGG CACGCCTGTG
ACGGCGGACG ACGTGGTGGC GACCTTCGAG GCCTTCAAGG CCGACGCCTA CGAGACCATC
CGCATGGCCC TGCGCGATCT CACCGCCGTG GAGGCGGATG GGCCGGGCGA GGTGGTGATG
CGCTTCCGCC CCGGCCGCGC CCGCGACGTG CCGCTCACCG CCGCCGGACT GCCGATCTTC
TCTCGCGCCT TCCTGGCGAA GCACCCGTTC AACCAGTCCT CGCTGGAAGT ACCGCTGGGC
TCGGGGCCAT ATCGGGTGAA GAAGTTCGAG CAGGGCCGCT TCATCGAATA TGAGCGGGTG
CCCGACTATT GGGGCCGCGA CCTGCCGGTG ATGAAGGGCC GCTTCAACTT CGACACGGTG
CGCTACGAAT ATTTCCGCGA CCGGGTGGCG GGCCTGGAAG GCTTCAAGGC CAGGGCCTAT
CTGTTCCGCG AGGAGTTCAC CGCTCGCGAA TGGGCCACCG CCTATGATTT CCCCGCCGTG
CGCGAGGGGC GGGTGAAGGT GGAGACCCTG CCGGACAATT CCTTTTCCGG CGTGCAGGGC
TGGTTCTTCA ACACCCGCCG CCCCAAGTTC TTCGACCGGC GCGTGCGCGA GGCCATCGGG
ATCCTGTTCG ACTTCGACTG GACCCGCAAG AACCTGATGT ACGATAGCTA CACCCGCACC
GTCTCCTTCT TCCAGAATTC GGAGATGATG GCGCAGGGGC TGCCCTCGCC CGCCGAACTG
AAGCTCTTGG AACCGTTCCG CGACCGCCTG CCGGAAGAGG TGTTCGGCGA GCCCTATGTC
CCGCCGGTCT CCGACGGCAG CGGAGAAGAC CGCAACCTGC GCCGGCAGGC CCTCGCCCTC
CTGAAGGATG CCGGCTGGAA CGTGCAGCAG GGCAAGCTCG TCGACGCCAA GGGCGAGGCC
TTCACCATCG AGTTCCTGGA TGATGACGGC GGCATGGAGC GCCATACGGC GCGCTTCATC
GGCCACCTGA AGAAAGTGGG CATCGACGCC ACCTTCCGCA TCGTGGACCC GGCCCAGTTC
CAGCTGCGGC TGCAGGGCTT CGACTTCGAC ATGGTGGTGC GCCGCTATTC CTTCGCGCCC
TATCCGGGCG ACGAACTGCG CGCCTATTTC TCGACCGAGG CGGCGCGCAC CCGCGGCTCC
TACAACGTGG CCGGCATCGC CGACCCGGCG GTGGACGGGC TCATCAACGC GGCGCTGGCC
GCCCCGGACG CTGCCGCCCT CGTGGTCGCC TGCCAGGCGC TGGACCGGGT GCTGCGTGCC
GGGCGCTACT GGATCCCCCA GTGGTATTCC GGCCAGCACC GCATCGCCTA CTGGAACCAG
TTCGCCCGCC CTGCCACCAA GCCGCGCTAC GACCTGGGCG CGCTCGACAC CTGGTGGAGC
ACCGGCACGG AGCCGGCCAG AGGCGGGTGA
|
|---|
| Protein sequence | MSLSRRTLLL SAASAVTLLP AMARGQPAPQ DAAANEGAAA SAAVERHGLS FFGDLRYPAG
FTHFDYVDPD APKGGPFSQM GRATFYNQSL NTFDTLNPYN QRGNGAQGIE LIYDTLMTAA
GDEKSAMYGR LASSVVIADE GLTYRFKLRP QARFHDGTPV TADDVVATFE AFKADAYETI
RMALRDLTAV EADGPGEVVM RFRPGRARDV PLTAAGLPIF SRAFLAKHPF NQSSLEVPLG
SGPYRVKKFE QGRFIEYERV PDYWGRDLPV MKGRFNFDTV RYEYFRDRVA GLEGFKARAY
LFREEFTARE WATAYDFPAV REGRVKVETL PDNSFSGVQG WFFNTRRPKF FDRRVREAIG
ILFDFDWTRK NLMYDSYTRT VSFFQNSEMM AQGLPSPAEL KLLEPFRDRL PEEVFGEPYV
PPVSDGSGED RNLRRQALAL LKDAGWNVQQ GKLVDAKGEA FTIEFLDDDG GMERHTARFI
GHLKKVGIDA TFRIVDPAQF QLRLQGFDFD MVVRRYSFAP YPGDELRAYF STEAARTRGS
YNVAGIADPA VDGLINAALA APDAAALVVA CQALDRVLRA GRYWIPQWYS GQHRIAYWNQ
FARPATKPRY DLGALDTWWS TGTEPARGG
|
|---|
| |