| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2469 |
|---|
| Symbol | |
|---|
| ID | 5424593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 2761011 |
|---|
| End bp | 2761787 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640881722 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001417368 |
|---|
| Protein GI | 154246410 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.583463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00325147 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGTC TTCTTCTCGC CACTGTCGCG TTCGCAGCGC TCTCCGCTCC GGCCATGGCC
GCTGACTTGG CGACGAAGTA TCCGGTCAAG GCCGTGGCCG TCGCTCCTGT GTTTTCCTGG
ACCGGCTTCT ACATCGGCGC CAACGTCGGT TACGGTGGTG ACAAGTTCAC CTTCGACGAA
GTCGAGTCGT ACAACGGCTA TCCCTACTAC GCGACCAGCA CGAGCCTGAA CTCTTCCGGC
TTCTTCGCCG GCGGTCAGAT CGGCTACAAC TACCAGTTCG CCAACAACGT GGTGCTGGGC
GCCGAAACCG ACCTCCAGTG GTCTGGTATC GAAGGCAAGG CAGACTACTC TTCCGTCTAC
CTCTATGGCG GCTATCCCTA CACCTCCAGC TTCGGTGCTT CGGTCGATTA CTTCGGTACG
ATCCGTGCTC GCATCGGTTA CGCCTTCGAC CGGTTCCTGC CCTACATCAC CGGTGGTGCC
GCTTACGGCA AGACCAAGGT GTCCGGCTCC TACTACGATT ATAGCGTCGG TGGGTTCAGT
GCTTCGGGCA CCAACTGGGG TTGGACCGTC GGCGGCGGCG TTGAATACGC CATCACCAAC
AACTGGACGT TCAAGACCGA GTATCTGTAC GTCGACTTGG GCAGCACCGA TTACACGTAT
GCCAGCGGCT CCGGTCCCGA GGCAATGATT GCTCTGGACC GCGGCTACTC CAACACCACC
GGCTCCGTGG ACACCAAGTT CCACACCCTC AAGGCCGGCG TGAACTACAA GTTCTGA
|
|---|
| Protein sequence | MKRLLLATVA FAALSAPAMA ADLATKYPVK AVAVAPVFSW TGFYIGANVG YGGDKFTFDE
VESYNGYPYY ATSTSLNSSG FFAGGQIGYN YQFANNVVLG AETDLQWSGI EGKADYSSVY
LYGGYPYTSS FGASVDYFGT IRARIGYAFD RFLPYITGGA AYGKTKVSGS YYDYSVGGFS
ASGTNWGWTV GGGVEYAITN NWTFKTEYLY VDLGSTDYTY ASGSGPEAMI ALDRGYSNTT
GSVDTKFHTL KAGVNYKF
|
|---|
| |