| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_1238 |
|---|
| Symbol | |
|---|
| ID | 5423356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 1423114 |
|---|
| End bp | 1425114 |
|---|
| Gene Length | 2001 bp |
|---|
| Protein Length | 666 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640880486 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_001416144 |
|---|
| Protein GI | 154245186 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.894999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAGC AGTCTTCCGA AGCGACCGAG GCTCCCGAGA AGGAGACCGA CGCGCCCGAC
GGGCCGTTGC TCGACCTCTC CGACGCCGCC GTCCGGAAGA TGATCAAGAA TGCCAAGCGC
CGCGGCTATG TGACCTACGA GCAGCTCAAT GAGGTGATGC CTTCCGAGGA AGTCACCTCC
GAGCAGATCG AGGACACTCT CGCGATGCTC AACGACATGG GCATCAACGT CATCGAGGCC
GAGGAAGCCG AGGCCGAAGA GGGCGCCGAG GAAACCGAGA CCGCCGAGGA GCCCGAGGAG
GCCGAAGGCG GCGAGCTCGC TGAGCCCGCC CCGCGCGCCG TCGCGCGCTC CGAGACCAAG
TCCGAGCCGG CCGAGCGCAC CGACGATCCG GTGCGCATGT ACCTGCGCGA GATGGGATCG
GTGGAGCTGC TCTCCCGCGA GGGCGAAATC GCCATCGCCA AGCGCATCGA GGCCGGCCGC
GAGGCCATGA TCGCCGGCCT GTGCGAGAGC CCGCTGACGT TCCAGGCCAT CATCATCTGG
CGCGACGAGC TCACCGAGGG CCGCGTGCTG TTGCGCGACA TCATCGACCT CGAGGCGACC
TACGCCGGCC CCGAGGGCAA GAACCCGCCC GCGGCCCTCG GCGAGGAAGC CGCCCTTGCG
CCTGAGGCCG GGGAAGACGG CCTTCTGGGC GACGCCCCCG GTCCCGAGGG CGAGGACGAC
GACATGGAAA ATTCCATGTC GCTCGCCGCC ATGGAGGCGG AGATCAAGCC GAAGGTGCTG
GAAACCTTCG ACCGCATCGC CTCCTCCTAC ACCAAGCTGC GGCGCCTGCA GGACCAGAAC
GTCGAATCCA AGCTGAAGAA CGAGACGCTG TCGCCGGCGC AGGAGCGCAA GGCGAAGAAG
CTGAAGGAAG ACCTCGTTGG CGACGTGAAG AGCCTGTCCC TCAACCAGGC CCGCATCGAC
GCCTTGGTGG AGCAGCTCTA CGAGATCAAC AAGCGCCTCG TGGGCCTGGA GGGGCGCCTG
CTACGCCTCG CCGACAGCTA TGGCGTGACC CGCGACGACT TCCTGAAGAA CTACATGGGC
GCGGAGCTGG ACCCCAAGTG GCTGCTGCGG GTCTCCAAGC TCGGCACCAA GGGCTGGAAG
GGCTTTGTCG GCCACGAGAA GGATACCATC CACGAGATCC GCGGCGACAT CCACGCGCTG
GCCACTGAGA CCGGGCTGGA AATCGCCGAG TTCCGCAAGA TCGTGCAGAT GGTGCAGAAG
GGCGAGAAGG AAGCCCGCCA GGCCAAGAAG GAAATGGTGG AGGCCAACCT GCGCCTCGTC
ATCTCCATCG CCAAGAAGTA CACGAACCGC GGCCTGCAGT TCCTGGACCT GATCCAGGAG
GGCAACATCG GCCTGATGAA GGCGGTGGAC AAGTTCGAGT ACCGGCGCGG CTACAAGTTC
TCCACCTATG CCACCTGGTG GATCCGGCAG GCCATCACGC GATCCATCGC CGACCAGGCG
CGCACCATCC GCATTCCCGT GCACATGATC GAGACGATCA ACAAGATCGT GCGCACGAGC
CGGCAGATGC TGCACGAGAT TGGCCGCGAG CCCACACCCG AGGAGCTGGC CGAGAAGCTC
GGCATGCCGC TCGAGAAGGT GCGCAAGGTG CTGAAGATCG CCAAGGAGCC CATCTCCCTC
GAAACGCCCA TCGGCGACGA GGAGGATTCG CACCTCGGCG ACTTCATCGA GGACAAGAAC
GCCATCCTGC CCATCGACGC GGCGATCCAG TCCAACCTGC GCGAGACCAC CACGCGAGTT
CTGGCCTCCC TCACCCCGCG CGAGGAACGC GTTCTGCGCA TGCGCTTCGG CATCGGCATG
AACACGGACC ACACGCTGGA AGAAGTGGGC CAGCAGTTCT CGGTGACCCG CGAGCGTATC
CGCCAGATCG AGGCGAAGGC GCTGCGCAAG CTCAAGCACC CCTCGCGCTC GCGCAAGCTG
CGGTCGTTCC TCGACAATTG A
|
|---|
| Protein sequence | MAKQSSEATE APEKETDAPD GPLLDLSDAA VRKMIKNAKR RGYVTYEQLN EVMPSEEVTS
EQIEDTLAML NDMGINVIEA EEAEAEEGAE ETETAEEPEE AEGGELAEPA PRAVARSETK
SEPAERTDDP VRMYLREMGS VELLSREGEI AIAKRIEAGR EAMIAGLCES PLTFQAIIIW
RDELTEGRVL LRDIIDLEAT YAGPEGKNPP AALGEEAALA PEAGEDGLLG DAPGPEGEDD
DMENSMSLAA MEAEIKPKVL ETFDRIASSY TKLRRLQDQN VESKLKNETL SPAQERKAKK
LKEDLVGDVK SLSLNQARID ALVEQLYEIN KRLVGLEGRL LRLADSYGVT RDDFLKNYMG
AELDPKWLLR VSKLGTKGWK GFVGHEKDTI HEIRGDIHAL ATETGLEIAE FRKIVQMVQK
GEKEARQAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF
STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKIVRTS RQMLHEIGRE PTPEELAEKL
GMPLEKVRKV LKIAKEPISL ETPIGDEEDS HLGDFIEDKN AILPIDAAIQ SNLRETTTRV
LASLTPREER VLRMRFGIGM NTDHTLEEVG QQFSVTRERI RQIEAKALRK LKHPSRSRKL
RSFLDN
|
|---|
| |