| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3477 |
|---|
| Symbol | |
|---|
| ID | 4690647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 3844778 |
|---|
| End bp | 3845959 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639851234 |
|---|
| Product | cystathionine beta-lyase |
|---|
| Protein accession | YP_998216 |
|---|
| Protein GI | 121610409 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases
[TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.489079 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACTTC ATCTCGATAC CCGCCTGGCC CATTGCGGCC GCCCCGCGCT GAACGCTGAA
AGTGGCCCGG TCAACACACC CGTGGTCCGA ACCAGCACCG TGCGTTTCCA GAGCATTGCG
GCGATGCAGG CGCAGGTCGG CAAGCGTGCC AGCGGCCAGC CCGTCAGCAC CTACGGCCGG
CATGGCATGG ACACGCAGCG CGCGCTGGAG CAGGCGCTAT GCGAACTCGA AGGCGGGACG
CGGGCCTGGC TGACACCGTC CGGGCTGGCG GCAATCTCGC TGTCACTGCT GGCGCTCACG
GCCCCGGGAG ACCATGTGCT GGTCACCGAC AGCGTCTACC AACCGGTGCG CAAGCTCGAT
GCCGGCCATT TGGCCCGCAT GGGCGTGCAA GTGGGTTATT TCGATCCGTC GACGCAGCCG
ATAGAAGACT GCTTGCAGCC CCATACCCGG GTGGTCTATG TCGAGACGCC CGGCTCGCTG
CTGTTCGAGA TGATCGATTT GGTGCCCATC GTGGCCATCT GCAACGCGCG CGGCATCAGC
GTGGTGGCGG ACAACACCTG GGCCTCGGGC TATTGGTTCA ATCCGTTGGC GCTGGGGGCC
GACATCTCGC TGATGGCCGG GACCAAATAC ATCGGCGGCC ACTCCGACCT GATGCAGGGC
GTGATCGTCA CCCAGGACGC CGCCCATGCG GCGCAACTGA CAAAAACCTA CGATGCGCTG
GGCCTGGCCG TCAGCCCCGA TGAAGCCTAC CTGGCGCTGC GCGGACTGCG CACGCTGGCC
GTGCGCATGC AGCAGCATCA GCACAATGCG CTGGCCGTCG CACAGTGGTT GGCCGCGCAT
CCGAAGGTCG AGCGGGTCTA CTGCCCGGCG CTGGCGACCG ACCCCGGCAA TGCGCTGTGG
CGGCGCGATT TCCGGGGGGC CAACGGCTTG CTGTCGGTGC AATTTCGTGA CTGCAGCGAG
GCGCGCCTGT TTGCCATCGC CGATGCGCTG GTGCTTTTCG ACATAGGCGC CTCATGGGGT
GGCTACGAGA GCCTGGTGTT GCCGGCAACC TGCGAAAAAC TCTCGGCGCA TCGCAGTTGG
CATGGGGCGG CCGGCGTTTT GCGATTGCAT GTCGGCCTGG AAAATTGCGC GGATCTGATC
GCCGATCTGG AGCAGGCGAT TGCGGGTGTG CTCGGGCCAT GA
|
|---|
| Protein sequence | MPLHLDTRLA HCGRPALNAE SGPVNTPVVR TSTVRFQSIA AMQAQVGKRA SGQPVSTYGR
HGMDTQRALE QALCELEGGT RAWLTPSGLA AISLSLLALT APGDHVLVTD SVYQPVRKLD
AGHLARMGVQ VGYFDPSTQP IEDCLQPHTR VVYVETPGSL LFEMIDLVPI VAICNARGIS
VVADNTWASG YWFNPLALGA DISLMAGTKY IGGHSDLMQG VIVTQDAAHA AQLTKTYDAL
GLAVSPDEAY LALRGLRTLA VRMQQHQHNA LAVAQWLAAH PKVERVYCPA LATDPGNALW
RRDFRGANGL LSVQFRDCSE ARLFAIADAL VLFDIGASWG GYESLVLPAT CEKLSAHRSW
HGAAGVLRLH VGLENCADLI ADLEQAIAGV LGP
|
|---|
| |