| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3384 |
|---|
| Symbol | |
|---|
| ID | 4693187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 3754342 |
|---|
| End bp | 3757083 |
|---|
| Gene Length | 2742 bp |
|---|
| Protein Length | 913 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639851142 |
|---|
| Product | regulatory protein, LuxR |
|---|
| Protein accession | YP_998124 |
|---|
| Protein GI | 121610317 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2909] ATP-dependent transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.425044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0489433 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTGA ACGACCCGGC CTCTCACCCG GGGGCCGTCG GCGTCGGCAT CACGCCGAAT
GTCGTCGCAT CCAAATTGAT GCCGCCGGCC AGTGCGGATA CGAATCTCGC GCGGCCGCAT
CTCGTCGACG GCATGCGCGC CGCGCATGCC GCGCGCCTCG TGCTGATCCG GGCCCCCGCC
GGCTTCGGAA AAACGACGCT GATGCAGCAG TACGCCGCGT CGTGCGACAG GCAGCGGCGC
GTGACCATCT GGCTACGCGT CGACCAGGCG GACAACGACT TGCCGCGCTT TGTCGGCCAT
CTCGGCGTCG GCCTGCGCAC GCTCACCCCC GACGACAATT TGCGCACCGT GTTCGGCGAA
CGGCTCGCCG CCAGCGTGAT CGAAACCGTC GCGTCGTTCC GTATGCCTTT CGCGATCCTG
CTGGACGATT TCGAGTCGAT CCAGAGCGCG TCGGTGCTGA ACTTCGTCCA GCATCTGATC
GATGCGCTGC CGCCCAACGG CACGCTCGTG ATCGCATCGC GCACCACGCC GGCACTCGGC
CTCGGACGGA TTCGCGCACG CGGGCAGCTA CTGGAGATCG ATTCCGCCGA ACTGCGTTTC
AGCCTTCCGG AAGCAACCGC GTTCATCCGC GACAAGTGCG CGCTGCCGTT GCGCGACAAG
GACATCGCGA CGCTGCATCG CTGCACCGAA GGATGGGCGG CCGCCATCTT CCTCGCGACG
CTGTCACTGC GGCAGCGCAC CGACTACGGC CGTTTCGTCG CGTCGTTTTC CGGCACGAAC
ACACAGCTCG CCGTCTATCT CACCGAAGAC ATCCTCGGCC AGCAGAGCGA ATCGTGTCGC
ACGTTCCTGA TCGAGACCAG CGTCCTGACG CAGTTGTCCG CCCCGCTGTG TGACGCGATC
ACGGGCCGGC ACGACAGCGG GGCGATGCTC GACCATCTCG AACGGTCGAA CCTGTTCCTG
TTTCCGCTCG ACAGCGAACG CAATGAATAC CGCTATCACA GCTTGTTCGC GAGCTTCCTC
CAGCATCGTC TGCGCGCACT GCATCCCGGG CGCGAGGCGG AACTGCACGC GGCTGCCGCG
CACTGGTTTC TCGATGCCGA GCGCCCGGTT CCCGCCATCG ACCATCTGTT GCAGGCCGGC
ATGAAGGCGC AGGCGATCGC ACAGCTCGGT CGGCACGCGG GCACGCTGCT CAACGACGGG
CGCGTGCGCC TGCTCGGGCG CTGGTTCGAT CAGATACGCG ACGCGCTGCC CCGGGCCGAT
CCGCGCGTGC GCATCAGTGA CGCGTGGGTG CTGCTGTTCA ATCGGCACTT CGACGAGGCG
ACGGCCGCAG TCCAGCGGAT CGTCGACGAC CACGCAGCGG ACGATTCGTG CGACACGCTG
CTGCTGCAAG CCGAGACGCT GCGCTGCACG CTGTACGCGA TGTCCGGCCA GTTGGACGCC
TGCTTGCGCG CGGGCCTTCC GCATCTCGAT CGGCTATCGC CCGACGAAAC GTTCCAGTAC
TGCATGCTCG CGATCTCCCT GTCCTACTGC CTCATGGCTG CGCAACGCTA TGACGAAGCG
CGCGCGGTAC TCGCGCGCGC CTCGTCCAAC GGACGCAGCG ACGGCTCCGT CGTCCTGCGC
AGCGTCGCCG ATTGCATCGA CAGCGTCATC GATCTGGTGC ATGGCCGGCT CGGCAGCGGG
CGCGCGCGCC TGAAGCACGC GGAGCACCAC TGGAACGAGT GCCATGGCGA GGTGACTGGC
GGCCGCGCGT CGGCCGGCAT CGCACTGGCA ATGGTGCTGT ACGAAGCCGA CGAGCTCGAA
GAGACCGGTC GGCTCATTGC CGCCAACCTC CCATACGCGA AGATGAACGG CCCCGTCGAT
TCGATGACGA TATGTCATGT GCTCAGCGCG CGCGTCGCGC TCATACACGG CGACCGTGAT
CTCTGGCAAA GGCGGCTCGT CGAACTGGAA GAACTCGGCC GCCAGGTCGG CTTGCAGAGA
GTGATCTGCT CGGCGTGGCT CGAACGCGCC CGGGTGTCAA CGCTCGATGG CGCGTTCGAC
GCCGCAGATC AGGCGTTGAA TATCGCTGAT CTACACGGCG CGTGGGAAAG GGATGATCTC
ATCGGCTACG CGAATGAAGT GGATTTGCCA TCGATCGCAC GCTGGCGTCT GCAAATCGCA
CGCGGCAACG ACCGCGCAGT CTGTGCGGCA TTGGCCGACG TCATCGTTGA TGCGACCGCA
CGGCAACGCT ATTGGCGTGC GATCAAGCTG CATCTGTTGC GCGCGATGGC GCTCGATCGC
GTCAGCGAGC ACGATGCCGC ATTCGACGAG CTCACCGACG CGCTGCGCTT GGCGAGTCAC
GAAGGATTTT TCCGGACCTT TCTCGACGAA GGCGAACGGC TTTCCGCGTT GTTGCAGCGC
TGGGCCACGC GCCATCGGGC CGCCGCCGCA TCGCTTGGCA TCGCGCAGCA GTTCCTGTCC
GCGCTGCTCG AACGCATCGA TGCGGCAGCA CGCAACGCTC AGCCGTCGCA TGCGGCGGCG
CCGTCAGCCA AGCATGCGGC CGACGCGGAA GCACTCACGC CGCGTGAACT CGATGTGCTG
CGGATGCTCG CGATGGGGCA TCGCAATCGT GTGCTCGCGG AAAAACTCTT CGTGTCGGAA
TTCACCGTGA AATCGCACCT GCGACGCATC AGCGCGAAAC TTGACGCGCA AAGCCGTACC
GAGGCCGTCG CGATCGGCCG CGCGCGCGGT CTGATCGAAT GA
|
|---|
| Protein sequence | MQVNDPASHP GAVGVGITPN VVASKLMPPA SADTNLARPH LVDGMRAAHA ARLVLIRAPA
GFGKTTLMQQ YAASCDRQRR VTIWLRVDQA DNDLPRFVGH LGVGLRTLTP DDNLRTVFGE
RLAASVIETV ASFRMPFAIL LDDFESIQSA SVLNFVQHLI DALPPNGTLV IASRTTPALG
LGRIRARGQL LEIDSAELRF SLPEATAFIR DKCALPLRDK DIATLHRCTE GWAAAIFLAT
LSLRQRTDYG RFVASFSGTN TQLAVYLTED ILGQQSESCR TFLIETSVLT QLSAPLCDAI
TGRHDSGAML DHLERSNLFL FPLDSERNEY RYHSLFASFL QHRLRALHPG REAELHAAAA
HWFLDAERPV PAIDHLLQAG MKAQAIAQLG RHAGTLLNDG RVRLLGRWFD QIRDALPRAD
PRVRISDAWV LLFNRHFDEA TAAVQRIVDD HAADDSCDTL LLQAETLRCT LYAMSGQLDA
CLRAGLPHLD RLSPDETFQY CMLAISLSYC LMAAQRYDEA RAVLARASSN GRSDGSVVLR
SVADCIDSVI DLVHGRLGSG RARLKHAEHH WNECHGEVTG GRASAGIALA MVLYEADELE
ETGRLIAANL PYAKMNGPVD SMTICHVLSA RVALIHGDRD LWQRRLVELE ELGRQVGLQR
VICSAWLERA RVSTLDGAFD AADQALNIAD LHGAWERDDL IGYANEVDLP SIARWRLQIA
RGNDRAVCAA LADVIVDATA RQRYWRAIKL HLLRAMALDR VSEHDAAFDE LTDALRLASH
EGFFRTFLDE GERLSALLQR WATRHRAAAA SLGIAQQFLS ALLERIDAAA RNAQPSHAAA
PSAKHAADAE ALTPRELDVL RMLAMGHRNR VLAEKLFVSE FTVKSHLRRI SAKLDAQSRT
EAVAIGRARG LIE
|
|---|
| |