| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3124 |
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| Symbol | rpsA |
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| ID | 4692874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | + |
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| Start bp | 3472706 |
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| End bp | 3474394 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639850882 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_997873 |
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| Protein GI | 121610066 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00164205 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0119703 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAAT CTTTTGCCGC CCTGTTTGAA GAATCCCTGC AACGCACGGA AATGCGTCCG
GGCGAAGTCA TCACCGCCGA AGTCATGCGC GTGGAACACA ACTTCGTCGT GGTCAACGCC
GGCCTCAAGT CCGAAGCCTA CGTGCCGCTG GACGAGTTCA AGAACGACAA GGGCGAGGTC
GAAGTCCAAG TGGGCGACTT CGTGTCGGTG GCCATTGGCT CGATCGAAAA CGGCTACGGC
GACACCATCC TGTCGCGCGA CACCGCCAAG CGCCTGGCCT CCTGGATGAG CCTGGAAAAG
GCACTGGAAT CGGGCGAATT CGTCACTGGC ACGACCAGTG GCAAGGTCAA GGGCGGCCTG
ACCGTGCTGG TCAACGGCAT CCGCGCCTTC CTGCCCGGCT CGCTGATCGA TACCCGTCCG
ATCAAGGATC TGACGCCGTA TGAAAACAAG ACCATGGAAT TCAAGGTCAT CAAGCTCGAC
CGCAAGCGCA ACAACGTGGT GCTCAGCCGC CGCGCGGTGG TCGAAGCCTC GATGGGCGAA
GAGCGCGCCA AGCTGATGGA AACCCTCAAG GAAGGCTCCA TCGTCCAGGG CGTGGTCAAG
AACATCACCG AATACGGCGC GTTCGTCGAC TTGGGCGGCA TCGACGGTCT GCTGCACATC
ACCGACATGG CCTGGCGCCG CGTGCGTCAC CCCTCCGAAG TGGTGACGGC CGGTCAGGAC
ATCACGGCCA AAATCCTCAA GTTCGACACC GAAAAGAACC GCGTCTCGCT GGGCCTCAAG
CAAATGGGCG ACGACCCCTG GCTGGGCGTG AGCCGCCGCT ACCCCCAAGG CACGCGCCTG
TTCGGCAAGG TCACGAACAT TGCCGACTAC GGCGCCTTCG TCGAGCTCGA ACCCGGCATC
GAAGGCTTGG TGCATGTCTC CGAAATGGAC TGGACCAACA AGAACATCGC TCCGGCCAAA
CTGGTGACGC TGGGCGACGA AGCCGAAGTC ATGGTCCTGG AAATCGACGA AGACAAGCGC
CGCATCAGCC TGGGCATGAA GCAGTGCAAG GCCAACCCAT GGCAGGAATT CGCCCAAAAC
ACCAAGCGCG GCGACCGCGT CAAGGGCCCC GTCAAATCGA TCACCGACTT TGGCGTGTTC
GTGGGCCTGG CCGCCGGCAT CGACGGCCTG GTGCACCTGT CCGACCTGTC GTGGAGCGAA
CCCGGTGAAG CCGCAGTCCG CAACTACAAG AAGGGCCAGG AAGTGCAGGC CATCGTGCTG
GCCGTGGATG TAGACCGTGA GCGCATCTCG CTGGGCATCA AGCAACTCGA CGGCGACCCC
TTCACGACCT TCGTGACCGT CAACGACAAG GGCCAGACGG TGACCGGCAA AGTCAAGACC
GTGGATGCCC GTGGCGCAGA AATCGAGATC GGCCAGGACA TCATCGGCTA CCTGCGCGCA
TCGGAAATCT CCCGCGACCG CGTGGAAGAC GCCCGCAACG TGCTCAAGGA AGGCGACGAA
GTCACGGCCG TGGTGGTCAA CATCGACCGC AAGACGCGCA ACATCCAGTT GTCGATCAAG
CAAAAGGACA TGGTGGACCA GCAAGAGGCA ATGCAGAACC TGTCGCAACA ATCGAGCCGC
GAAAGCGCCG GCACGACCAG TCTGGGCGCC TTGCTGCGTG CCAAGCTGGA CAACAACCAG
GACAAGTAA
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| Protein sequence | MSESFAALFE ESLQRTEMRP GEVITAEVMR VEHNFVVVNA GLKSEAYVPL DEFKNDKGEV
EVQVGDFVSV AIGSIENGYG DTILSRDTAK RLASWMSLEK ALESGEFVTG TTSGKVKGGL
TVLVNGIRAF LPGSLIDTRP IKDLTPYENK TMEFKVIKLD RKRNNVVLSR RAVVEASMGE
ERAKLMETLK EGSIVQGVVK NITEYGAFVD LGGIDGLLHI TDMAWRRVRH PSEVVTAGQD
ITAKILKFDT EKNRVSLGLK QMGDDPWLGV SRRYPQGTRL FGKVTNIADY GAFVELEPGI
EGLVHVSEMD WTNKNIAPAK LVTLGDEAEV MVLEIDEDKR RISLGMKQCK ANPWQEFAQN
TKRGDRVKGP VKSITDFGVF VGLAAGIDGL VHLSDLSWSE PGEAAVRNYK KGQEVQAIVL
AVDVDRERIS LGIKQLDGDP FTTFVTVNDK GQTVTGKVKT VDARGAEIEI GQDIIGYLRA
SEISRDRVED ARNVLKEGDE VTAVVVNIDR KTRNIQLSIK QKDMVDQQEA MQNLSQQSSR
ESAGTTSLGA LLRAKLDNNQ DK
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