Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Veis_2953 |
Symbol | |
ID | 4690448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Verminephrobacter eiseniae EF01-2 |
Kingdom | Bacteria |
Replicon accession | NC_008786 |
Strand | - |
Start bp | 3301777 |
End bp | 3305160 |
Gene Length | 3384 bp |
Protein Length | 1127 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639850713 |
Product | YD repeat-containing protein |
Protein accession | YP_997706 |
Protein GI | 121609899 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000628016 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGAAGA AAATCATCCG GCGTTTTTGG TTGCTCCTGC TCGCTGGCGC CGGGGCCGCC AGTGCGCAGG AAGTCATACC GGATTTCTAC AAAGAGCCCG GCCTCCAGTC GAATCGCGAT TTCGTCAATC AGAGCCATCA CGAGAATATC GATCCATTCA CCGGATCTTT GCAGCGCCAC TATGTGGATA TCCGCATTCC GGGCAATGGC GGGTTTGATC TTCAAATCGT TCGATCCTAC AACAGCAGCA ATGTCGACCC CGCCAATGCA ACTGCGCCAA AGACAACCGC GGGCTGGGGA TGGACGATCC ATTTTGGCCG CATCCTGAGA GCGCGTGAAA GCCTGCCTTG CGTCAACATG AACCGGCTCA CCATTGCTGA CAATCCGGTT CTGGAGCTTC CGGACGGCAG TCGACAACTG CTGACATTCA CCGGACAGGT CTCTCCGATG GCGCTGACGG CGCAGCGCTG GAAAGCAGAA TGCCCTCCAG GAGGCAACGG TCTGATCATC ACCTCTCCCG ATGGCGTGAT TTATGAAATG ACACAGGCCC TTGGTGCCAG TTCCAGAATC TCGCCTGTTT ATGAGTGGCA TACCAAAAAG ATCACGGACC GCAATGGCAA CTATATTTCC ATTGATTATG CAACCACAGC CAGCCCCGAG ATTCGCAGTA TCGCGACCAA CGATGGGCGC TCGGTATCAT TCAGCTATCA TGATTCGGGA ACTGCATCCG CAAGAATTCG CAGCATCACC AGTGCCGGGC AAACCTGGCA ATACAATTAT CAGTCCTCCG GAATTACCGG GGTTCATCAA CTGGCCAGTG TCACGAGACC GGACGGCCAT ACATGGGCAT ATACCTATAA TGGCAACAAT GGTTTTGCAG CAGGCAGCTA TCTCATGCGG TTGGCAAAGA CCCCCTACAA CGGAACCATC TACTACGAAT ATGACCACGT ATATTTTGAC TCCCAATCAA ACCCTGGCAG CCGGTCCAAT GTCGTCCGCA GCAAATCATT GAGCACAGGC GGAAGCTGGA CTTTCAGCTA TTCACCGGGT GGCGCAGGAT CGCTCGATAC CACCACCGTG ACCAACGCCG CAGGAACGAC AACCTACAAG CATATCGGGC CAATGTATGC AGGCCCGGGC AATGTCTGGA AGGTCGGATT GCTGGCAGAA AAAAGGATTG GAAATACACA GATAGAGCAG TACCAATGGC AGGGACAGCA AATCTCATCG GAAACCTACG TTCGCCCGGG TGCATTTGTC ACCAAGTTCG ACTACCTGCA AACCAACGCC CCGCTTTTGA CGCAGAAGAC GATCATCCGC GATGGGGGAA CATACCGCAC CGATTACAGC AATTTTGACA GCCATGGCAA TCCACGCTCG ATCGTGGAGT CAGGTCCGAA CCGGGGGAAC AGAACGACGA CCGTGAGCTA CTACATCAAC ACCGCAAAGT GGATCATCCG GCAGGTACAG AACGAGAGCT CCTACGGAAA TTCAGTCACC CGATCTTTCG ACAGCAGAGG CAATCTGATC ACGGAAACCA GGAATGGCAT CACCGTCAGC CGCAGCCATG ACACGCAAGG AAATGTGAAC AGCATCACCT TCCCCAGGTC GTTGACCTAT CGCTATTCAA ATCACATGCG TGGCATTCCA CAAAACGAAA GCCAGCCCGA GGGTATCTAC GTCTATCGGC AAGTCAGCGA TGCAGGGAAT GTCGTCTCTG AAACCGATGG CAGTGGTCAC ACGACCCGCT ACGACTACGA TGGCTTGAAT CGAATCACGT CAATCGATCT TCCCGTCGGG AACGGGGTGA GCATCAGCTA CGGAACCAAT ACCCGCACCG TCACACGCGG ATCACTTGTC GAGACCAGTA CCTACGATGG ATCAGGTTAC GTCACCCATG TGAATCACGG TGGAATTTCA ACCTCATACA CGGTCGATGC GCTCGGACGA ATCACGTTCG TGTCTGACCC CAACAATGAC TCCGGGGGTA CCTATTCTTA CGACGGTCTG CACCGGGTGA TCCAAATCCG GAATGCCGAT GGCTCCGCCA AAACCATCAG CCATGACGCT GGCTCCAAAA CCATCCGGGA TGAACGCGGC AACGCGACGA CCTACAACTA TCGGGCTTAT GGCGATCCCG ACAAGGTATT TTTGCTGGAA GTGAACACGC CCGAGAGCAG CGCCAGTGTC CGCTACAGTC GCAACAGCAA GGATTTGATC ACTTCTGCAG TACAAAATGG AGTGACCAGA AATTACACAT ACAACGATGC CGGCCATTTG ATCTCTGCTT TCCATCCCGA GTCGGGAACT ACCAGCTATG GCCGTGACGC GGCAGGAAAC ATGACATCAA AAAGCACGGG ATCTGCCGGA ACCATCCGGT ATGCATATGA CCAACAGAAC CGGTTGCAAA ATATTGTTTA TCCCGATTCC ACACCTTCCG TTGCTCACTC ATATGATGGT GCGCATCGGC TGTTGAGCAC CACCTCTTCG GATGCGGCAC GTTACTTTAC CTATGATGGC AATGGCAACC TCAAGAGCGA GCAGCTTTCT TCGGACGGAA TATCCTGGAC TGCACGATAT GCATACAACG GAAACGACCA ATTGACATCC ATCGTATATC CCCACTCTGG CGATACGGTC TGGTATGGGG TCGACAACCT CGGGCGCCCT ACTTCGATCA CAGGGTATGT CGATGCCGTC AGTTATTGGC CATCCGGACA GATTCGGAGA ATATCGTATG CGAACGGTAC CCAATCTGAA TATGGACAAA ACTCCCGGTT GTGGCCCAGC TCATTCATCA CCTCGCACGC TGGCAGCTAC TATGGACGCT CCATTTTCAG CTACGATGCG GTGGGCAACC TGACTGCGAT CAATGATTCC ACAGATGCCC AGTACAACCG CACATTCGGC TTTGACAGCA TGGACCGACT GACCAGCGTC ACAACTCCGC AGGGAACGGG GTATATATAT TACGACGGAG TCGGAAACAT CACGGCCCAG AATCTCCCCG GAACACGACT GACCTACCAT TACGATGGCA ATAATCGATT GAGCGGTTTG AGCGCATCGC CGGCGACACT GTCAACCGCC TATGCCTACG ATGCGCTGGG CAACATCACC AGCGGCGGAG GACGGACGTT CACCTATGAT GCAGTGCCCA ATCTCAGATG CGTCAATTGT GCAAACCCTG CGAACAGTGT GCAGTACATG TACGACGGAA ATCAGAAGCG GACGAGTGTC ACTCAAGGCG GTATCAAGAC CCATGAGTTC CATGGGGTGC ATGGAAACCT GCTTGCCGAA TACACCCCGG GATTCCCTGG AAAATTGATT CAGTACATCT ATCTGAACGG CAAGCGTATT GCCCAGAAGG AGTCCGCACA ATGA
|
Protein sequence | MLKKIIRRFW LLLLAGAGAA SAQEVIPDFY KEPGLQSNRD FVNQSHHENI DPFTGSLQRH YVDIRIPGNG GFDLQIVRSY NSSNVDPANA TAPKTTAGWG WTIHFGRILR ARESLPCVNM NRLTIADNPV LELPDGSRQL LTFTGQVSPM ALTAQRWKAE CPPGGNGLII TSPDGVIYEM TQALGASSRI SPVYEWHTKK ITDRNGNYIS IDYATTASPE IRSIATNDGR SVSFSYHDSG TASARIRSIT SAGQTWQYNY QSSGITGVHQ LASVTRPDGH TWAYTYNGNN GFAAGSYLMR LAKTPYNGTI YYEYDHVYFD SQSNPGSRSN VVRSKSLSTG GSWTFSYSPG GAGSLDTTTV TNAAGTTTYK HIGPMYAGPG NVWKVGLLAE KRIGNTQIEQ YQWQGQQISS ETYVRPGAFV TKFDYLQTNA PLLTQKTIIR DGGTYRTDYS NFDSHGNPRS IVESGPNRGN RTTTVSYYIN TAKWIIRQVQ NESSYGNSVT RSFDSRGNLI TETRNGITVS RSHDTQGNVN SITFPRSLTY RYSNHMRGIP QNESQPEGIY VYRQVSDAGN VVSETDGSGH TTRYDYDGLN RITSIDLPVG NGVSISYGTN TRTVTRGSLV ETSTYDGSGY VTHVNHGGIS TSYTVDALGR ITFVSDPNND SGGTYSYDGL HRVIQIRNAD GSAKTISHDA GSKTIRDERG NATTYNYRAY GDPDKVFLLE VNTPESSASV RYSRNSKDLI TSAVQNGVTR NYTYNDAGHL ISAFHPESGT TSYGRDAAGN MTSKSTGSAG TIRYAYDQQN RLQNIVYPDS TPSVAHSYDG AHRLLSTTSS DAARYFTYDG NGNLKSEQLS SDGISWTARY AYNGNDQLTS IVYPHSGDTV WYGVDNLGRP TSITGYVDAV SYWPSGQIRR ISYANGTQSE YGQNSRLWPS SFITSHAGSY YGRSIFSYDA VGNLTAINDS TDAQYNRTFG FDSMDRLTSV TTPQGTGYIY YDGVGNITAQ NLPGTRLTYH YDGNNRLSGL SASPATLSTA YAYDALGNIT SGGGRTFTYD AVPNLRCVNC ANPANSVQYM YDGNQKRTSV TQGGIKTHEF HGVHGNLLAE YTPGFPGKLI QYIYLNGKRI AQKESAQ
|
| |