| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_2185 |
|---|
| Symbol | |
|---|
| ID | 4691963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 2478689 |
|---|
| End bp | 2479999 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639849947 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_996951 |
|---|
| Protein GI | 121609144 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.97784 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGCA GCGTCATCGG AGCCATTGGC GTTGGTCTGG CGCTGCTGCT GATTTTTCTG
CGTGTGCCGA TCGGCGTGGC CATGGGCCTG GTGGGGCTGG GCGGCATCGC CGCGCTCAGT
TCCTGGAATG CCGCTTTCGG CATTGCCAAA ACCATTCCCT ACGAGCTCAT CGGCGACTGG
AACCTGTCGG CCGTGCCGAT GTTTCTTCTG ATGGGCTATG TGGCCTCGGC CACCGGCCTG
ACCCATGGAC TGTTCGCCTC GGCGCGCATC TTCCTCGGTC ATGTGCCAGG CTCGCTGGCC
TCGGCCACCG TGCTGGCCAG CGCCTTTTTC GCATCGGCTT CAGGCTCCAG CGTGGCCACG
GCGGCAGCCT TTTCGCGCAT CTCCGTGCCC GAGATGCTCA AGGCGAAGTA CGACCCGGCG
CTGGCCACCG GCTGCGTGGC CTCGGCCGGC ACGCTGGGCT CGCTGATCCC GCCTTCGATC
CTGATGATCA TCTTCGGCAT CATGGCCGAT GTCTCGATCT CGCGCCTGTT CATGGCCGGC
GTCGTGCCCG GCATCCTGTC GGCGCTGGTC TTCATCGGCT GCATCACCAT CGGCTGCATG
CTCAACCCCC GGCTCGCCCC GCCGGTGCAT GCGCTCTACA GCCGCGCGCA GAAGCGGGCG
GCGGCGCAGG ATGTCTGGCC GCTGCCGCTG CTCATCGTCG GCGTGCTCGG CGGCATCTTC
TGCGGCGCGT TCACGGCCAC CGAGGCCGGC GCGATCGGCG CCGCCAGCGC CTGCGCCATC
GCCGGGTTGC GCCGCTCGCT GAACAAAGAC AGCTTGCGCA AGGCCCTCGT CGATACCGCC
GAAGGCACTT CGGCGATCTT CATCATCGTC GTCGGGGCGG CCATCTTCTC GCGCTACATG
TCCTACAGCC AGTTGCCCAC GGCCATGTCG CAGTGGCTGC TGGGCAGCCT CGACAGCCAA
CTGACCATGG TGCTGGCGAT TGCCGTGATC TACCTGATCC TGGGCTGCGT GCTCGAAAGC
GTCTCGATCA TGCTGCTGAC CATGCCCTTG CTGCTGCCGC TGCTCACGCA GATGAACGTC
GACCTGGTGT GGTTCGGCAT CCTGGTGATC AAGCTGCTCG AGATCGGCCT GTGCACGCCG
CCCGTGGGCA TGAACGTCTA CGTCGTCAAG AGCGCGCTGG GCGAGCGCGT GCCGCTGGGC
ACCATCTTTC GCGGGGTCGC ATGGTTCATC GCCGCCGACC TGTCGACGCT GGGCCTGCTG
ATTGCCTTCC CGCAGATCAG CCTCTGGCTT CCCGATCTGC TGTCCAGGTG A
|
|---|
| Protein sequence | MERSVIGAIG VGLALLLIFL RVPIGVAMGL VGLGGIAALS SWNAAFGIAK TIPYELIGDW
NLSAVPMFLL MGYVASATGL THGLFASARI FLGHVPGSLA SATVLASAFF ASASGSSVAT
AAAFSRISVP EMLKAKYDPA LATGCVASAG TLGSLIPPSI LMIIFGIMAD VSISRLFMAG
VVPGILSALV FIGCITIGCM LNPRLAPPVH ALYSRAQKRA AAQDVWPLPL LIVGVLGGIF
CGAFTATEAG AIGAASACAI AGLRRSLNKD SLRKALVDTA EGTSAIFIIV VGAAIFSRYM
SYSQLPTAMS QWLLGSLDSQ LTMVLAIAVI YLILGCVLES VSIMLLTMPL LLPLLTQMNV
DLVWFGILVI KLLEIGLCTP PVGMNVYVVK SALGERVPLG TIFRGVAWFI AADLSTLGLL
IAFPQISLWL PDLLSR
|
|---|
| |