| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_1265 |
|---|
| Symbol | rplD |
|---|
| ID | 4691019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | + |
|---|
| Start bp | 1406648 |
|---|
| End bp | 1407268 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639849037 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_996051 |
|---|
| Protein GI | 121608244 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000518808 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTCG AACTCCTGAA TGACCAAGGC CAGGGCGCAT CCCGGCTGGA TGTGCCCGAA
ACCGTTTTCG GTCGCGAATA CAACGAAGCG CTGGTGCACC AGATCGTGGT CGCCTACCAG
GCCAACGCAC GCCAAGGCAC CCGCGCCCAG AAAGACCGTG GGCAGGTCCG GCACTCGACC
AGGAAGCCGT TCAAGCAAAA GGGCACGGGC AATGCGCGCG CCGGCATGAC CTCCTCGCCG
CTGTGGCGCG GGGGTGGCCG GATTTTTCCG AACATGCCGG ACGAGAACTT CACGCACAAG
ATCAACAAGA AGATGTACCG CGCCGGCATG TCGGCGATCT TCTCGCAGTT GGCCCGCGAA
GGCCGTCTGG CGGTGGTCGA ATCGATCAAG CTCGACTCGC CCAAGACCCG GGTCCTGGCC
GACAAGTTCA AGGCGATGAA CCTGCAATCG GTGATGGTGA TTGCCGATGA AGTCGACGAA
AACCTGTATC TGGCAGCGCG CAACCTGGTG AACGTGCTCG TCGTCGAGCC CCGTTACGCC
GATCCCGTGT CGCTGGTGCG CTTCAAGAAA GTGCTCGTCA CCAAGGGCGC AATCGACAAA
CTCCAGGAGA TGTTCGCATG A
|
|---|
| Protein sequence | MQLELLNDQG QGASRLDVPE TVFGREYNEA LVHQIVVAYQ ANARQGTRAQ KDRGQVRHST
RKPFKQKGTG NARAGMTSSP LWRGGGRIFP NMPDENFTHK INKKMYRAGM SAIFSQLARE
GRLAVVESIK LDSPKTRVLA DKFKAMNLQS VMVIADEVDE NLYLAARNLV NVLVVEPRYA
DPVSLVRFKK VLVTKGAIDK LQEMFA
|
|---|
| |