Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6290 |
Symbol | |
ID | 7975506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 1029050 |
End bp | 1029745 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644796860 |
Product | Integral membrane protein TerC |
Protein accession | YP_002948119 |
Protein GI | 239820934 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0861] Membrane protein TerC, possibly involved in tellurium resistance |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.06689 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGTTTT TGACCAGTCC GGATTTCTGG ATTGCCCTGT CGCAGATCAT CCTGATCAAC ATCGTCCTGA GCGGCGACAA CGCCGTCGTC ATCGCGATGG CTTCCCGCTC GCTGCCGCCT GCCCAGCAGA AGAAGGCGAT CCTGTTCGGC AGCATGGGCG CCATCGTGCT GCGCGTGGTG CTGACCTTCT TTGCGGTCTA CCTGCTGACG CTGCCCTACC TCAAGCTGGT GGGCGCCGCG CTGCTGTTCT GGATCGGCAT CGGCCTGCTC AAGGGCGATG ACGGCGAAGA GAACCTGGAA GGCCATTCGA GCCTGGCTGC GGCCATCAAG ACCATCGTGG TTGCCGACCT GGTCATGAGC CTGGACAACG TCGTCGGCGT GGCCGCCGCC GCCAAGGGCA ACGTGCCGCT GCTGGTGTTC GGCCTCGTGA TCAGCATTCC GCTGATCATC TTCGGCAGCA CGCTGATCCT CAAGCTGATG GACCGCTTCC CGATCATCAT CACGCTCGGT GCCGCCCTGC TGGGCTGGGT GGCCGGCGAA ATGGCGATGT CGGATCCGTC GATCGCCGGC TGGGCCGCGA GCCAGCATGC GCTGCACACG ATCGTGCCCG CGATCGGCGC CATCTCCGTC GTGGCGATCG GCAAGTGGCT GACCAGCCGG CAACAGCAGC CGGAACCCGC CAACCAGTCG GCCTGA
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Protein sequence | MSFLTSPDFW IALSQIILIN IVLSGDNAVV IAMASRSLPP AQQKKAILFG SMGAIVLRVV LTFFAVYLLT LPYLKLVGAA LLFWIGIGLL KGDDGEENLE GHSSLAAAIK TIVVADLVMS LDNVVGVAAA AKGNVPLLVF GLVISIPLII FGSTLILKLM DRFPIIITLG AALLGWVAGE MAMSDPSIAG WAASQHALHT IVPAIGAISV VAIGKWLTSR QQQPEPANQS A
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