Gene Vapar_6290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6290 
Symbol 
ID7975506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp1029050 
End bp1029745 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content65% 
IMG OID644796860 
ProductIntegral membrane protein TerC 
Protein accessionYP_002948119 
Protein GI239820934 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0861] Membrane protein TerC, possibly involved in tellurium resistance 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.06689 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTTTT TGACCAGTCC GGATTTCTGG ATTGCCCTGT CGCAGATCAT CCTGATCAAC 
ATCGTCCTGA GCGGCGACAA CGCCGTCGTC ATCGCGATGG CTTCCCGCTC GCTGCCGCCT
GCCCAGCAGA AGAAGGCGAT CCTGTTCGGC AGCATGGGCG CCATCGTGCT GCGCGTGGTG
CTGACCTTCT TTGCGGTCTA CCTGCTGACG CTGCCCTACC TCAAGCTGGT GGGCGCCGCG
CTGCTGTTCT GGATCGGCAT CGGCCTGCTC AAGGGCGATG ACGGCGAAGA GAACCTGGAA
GGCCATTCGA GCCTGGCTGC GGCCATCAAG ACCATCGTGG TTGCCGACCT GGTCATGAGC
CTGGACAACG TCGTCGGCGT GGCCGCCGCC GCCAAGGGCA ACGTGCCGCT GCTGGTGTTC
GGCCTCGTGA TCAGCATTCC GCTGATCATC TTCGGCAGCA CGCTGATCCT CAAGCTGATG
GACCGCTTCC CGATCATCAT CACGCTCGGT GCCGCCCTGC TGGGCTGGGT GGCCGGCGAA
ATGGCGATGT CGGATCCGTC GATCGCCGGC TGGGCCGCGA GCCAGCATGC GCTGCACACG
ATCGTGCCCG CGATCGGCGC CATCTCCGTC GTGGCGATCG GCAAGTGGCT GACCAGCCGG
CAACAGCAGC CGGAACCCGC CAACCAGTCG GCCTGA
 
Protein sequence
MSFLTSPDFW IALSQIILIN IVLSGDNAVV IAMASRSLPP AQQKKAILFG SMGAIVLRVV 
LTFFAVYLLT LPYLKLVGAA LLFWIGIGLL KGDDGEENLE GHSSLAAAIK TIVVADLVMS
LDNVVGVAAA AKGNVPLLVF GLVISIPLII FGSTLILKLM DRFPIIITLG AALLGWVAGE
MAMSDPSIAG WAASQHALHT IVPAIGAISV VAIGKWLTSR QQQPEPANQS A