| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6257 |
|---|
| Symbol | |
|---|
| ID | 7975473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 994887 |
|---|
| End bp | 995879 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796827 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002948086 |
|---|
| Protein GI | 239820901 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTCA ATCGCATGTC GCGCCGAGGC TTCCACGCCG CTGCGGGCGC CGGCCTTGCG
CTCGCGGCCC TGAGCCCGCT CGCAAGCGCG CAGTCCGCCT TTCCGTCGAA GCCGATCCGC
ATCGTCGTGC CCTTTGCGGC CGGCGGCCCG ACCGACCTGA TGGCGCGCGC CATCGCCAAG
AACATGGCCC CCGGCCTCGG CCAGCCCGTG ATCGTCGACA ACAAGCCCGG CGGTGGCGGC
GTGATCGGCA TGAGCGAGAT CGCGCGCGGC CCGGCCGACG GCTACACGAT GGTCTTTCCC
TCGATCCTCG CGGTCACCAA TCCGGCGCTG ATGCCGAACT ATCCTTTCGA TACGCTGCGC
GACTTTGCGC CGCTCACGGT GGTGGGCTTC ATTCCGCATG CGGTGGTGGT GAAGCCGGAC
TTCCCCGCCA GGAACCTGCA GGAGCTGGTC GAGATGGCCA AGGCCAAGCC CGGCAGCCTT
TCGTACGGCT CCTCCGGCAA CGGCACCTCT GCGCACCTGG GCGCCGCATT GTTCGTGCAG
CGCGCCGGCA TCCGCGCGGT GCATGTGCCC TACCGGGGCG CCGGCCCGGC GGTGCAGGAC
CTGCTGGGCG GCCAGATCCA GTTCATGTTC CTCGACATGA GTTCGGCGCT CGCGCAGATC
AAGGCGGGCA AGCTGCGCGC GCTCGCGGTC GCGCCCAAGT CGCGCTTCGC CGGCCTGCCC
GATGTGCCGA CCGTCGCCGA GCAGGGCTAT CCCGGCTTCG ACGTGCATGG CTGGTACGGG
CTGCTGCTGA AGGCCGGCAC GCCCGCGCCG CTCATGCAGC GGCTCTATGC CGAGGTCAAG
CGCTCGCTCG ATGCGCAGGA AGTGCGCGAG ATCTTCCAGG CCCAGGGCAT CGAGCCGGGC
GGCATGCCGC CGGCCGACTT CACGGCGCTG ATACGCGACG ACCTCGCGCT GTGGAAGCGC
ACGGTCGAGC AGTTGAACAT CACCTTGCAA TGA
|
|---|
| Protein sequence | MNLNRMSRRG FHAAAGAGLA LAALSPLASA QSAFPSKPIR IVVPFAAGGP TDLMARAIAK
NMAPGLGQPV IVDNKPGGGG VIGMSEIARG PADGYTMVFP SILAVTNPAL MPNYPFDTLR
DFAPLTVVGF IPHAVVVKPD FPARNLQELV EMAKAKPGSL SYGSSGNGTS AHLGAALFVQ
RAGIRAVHVP YRGAGPAVQD LLGGQIQFMF LDMSSALAQI KAGKLRALAV APKSRFAGLP
DVPTVAEQGY PGFDVHGWYG LLLKAGTPAP LMQRLYAEVK RSLDAQEVRE IFQAQGIEPG
GMPPADFTAL IRDDLALWKR TVEQLNITLQ
|
|---|
| |