| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6248 |
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| Symbol | |
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| ID | 7975464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 984827 |
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| End bp | 986953 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796818 |
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| Product | GAF modulated sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_002948077 |
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| Protein GI | 239820892 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.423516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGATG CCTTTCATGC CCCAGCCAGC CCTCCCCATG GCTGGACCGC GCCGTCGGCG
CTGGCCGTCG CGCCCCCCCG GGCCGGCCGC AGCGAGCTGA TCCAGCAGTG GCACGAGCGC
TGCGCCGCGC TGGGCCTGTC GCGCGTGGAG CGGCCGGACT TCGATCCGCT GCAGCACAGC
GACCTCGCGG TGGCGCGCGA GCGCAACCAG CGGCTGTTCA CGCATGCGGC GCCGGTGATG
GAGATGCTGC TCGAGCAGAT CGTCGACACC GACAGCATGA TCGTGCTGGC CGACACCACC
GGCACCATCC TGCACTCCGT GGGCGACGAC AGGTTCCTGC AGCGCGCCAA CAAGGTGGCG
CTCACGCCGG GCGTGAGCTG GGCCGAGCAT TCCAAGGGCA CCAACGCCAT CGGCACCACG
CTGGTCGAGG AAACGCCGAC CGTCGTGCAT GGCGGCGAGC ACTTCATCCA CGCCAACAAC
TTCCTCACCT GCTCGGCCGC GCCGATCTTC GACCCGCGCG GCGAGATGCT GGGCGTGCTC
GACGTCACCG GGGACCAGCG CTCCTACCAT CAGCACACGA TGGGCCTGGT GCGCATGTCG
GCGCGCATGA TCGAAAACCA GTGGTTGTCG GACGACTACG GCAACCGCCT GCGGCTGCAC
TTCCATGGCC GCGCGGAGTT CATCGGCACG CTGCTCGAGG GGATCATCGT GGTGGGCGTG
GACGGCAAGA TCCTGGGCGC CAACCGCAGC GCGCTGGACC AGCTCGACAT GAGCATTGCC
GCGCTGCGCA TGCAGAGCCT GCCGAGCCTG TTCGGCATCA CGGCCTCGGC CGTGTTCGAC
CATTTCCGCA CGCCGCTGCC CACGCCGATG ATGCTGCATG CGGCCAACGG GCAGCAGTTC
CACGTCAACG CGCGCTTCAA CGGGCCGCAG CGCGCGGTGG TGCTGGACAT GCCCGTGACC
TCGGTGGAAG CGCGCATGCC CACTCCCGCC CGCGACGCGG CCGCCGCCGC GGCCGCGCGG
CCGCCCTGCC CTTTGGCGCA GGCCCCCTTC TCCGGCCTGC GCTACCTGGA CACCGGCGAC
GCGCAGATCG CCGCCACGCT GCAGAAGGTG CGGCGCGTCA TCAACCGCGA CATCCCGCTG
CTCATCCTCG GCGAGACCGG CACCGGCAAG GAGCTGCTCG CGCGCGCCGT GCACCAGGAC
TCGAACCGCG CCCGGCAGCC CTTCGTGGCG GTCAATTGCG CCTCCATCCC CGAATCGCTG
ATCGAGGCCG AGCTGTTCGG CTACGAGGAC GGCGCCTTCA CCGGCGCGCG CCGCAAGGGC
GCGGTCGGGC GCATCGTGCA GGCCAACGGC GGCACGCTGT TCCTGGACGA GATCGGCGAC
ATGCCGCTGC CCTTGCAGGC GCGGCTGCTG CGGGTGCTGC AGGAACGCAA CGTCACACCG
CTGGGCAGCC TCAAGTCGAT CCCGGTGGAC ATTGCCGTCA TCGGCGCCAC GCACCGCAAC
CTGCGCGAGA TGATCGATGC GGGCACCTTC CGCGAAGACC TCTACTACCG CCTCAACGGC
CTGGTGGTGC GGCTGCCGGC GCTGCGCGAG CGCAGCGACC TGGACGTGGT GGCGCGGCGC
ATCCTGCTGG CCGAATGCCC GCAGGACACG CCCGCGATCG ACGCCTCGGT GCTCGCGCTC
TTCAAGGCCT ATGCCTGGCC CGGTAACCTG CGCCAGCTGG CCAACGTGCT GCGCACCGCC
GCTGTGATGG GCGCGGGCGA AAGCCACATC TGCGAGCACC ACTTGTCGGA CGACTTCCTG
GAGGATGTGC GGCGCGTGCG GCCCCAGGCG GCGGCCATTG CGCCGGCATT CGCACCCGCA
CCCGCGCCCT CTCCCGCGCC GGACTTCGCT GCAACGCAGG CGGCCTACGC CGCCGCCGCG
CCCGAGCCCC TGCCCCCACC CTCGCAAGAC GCCGAGCCAT CGTCCGCCGC CGCCCCGAGC
GCGCCACGCA CGCTCGGGGA AGCCGAGATC GAGATGATCC GCAGCGCCCT TGCGGCGGCC
GACGGCAACA TCTCGGTCGC CTCCAAGCGC CTGGGCATCA GCCGCAACAC CATCTACCGC
AAGCTGCGCT GGAACAAGGC CGGCTGA
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| Protein sequence | MVDAFHAPAS PPHGWTAPSA LAVAPPRAGR SELIQQWHER CAALGLSRVE RPDFDPLQHS
DLAVARERNQ RLFTHAAPVM EMLLEQIVDT DSMIVLADTT GTILHSVGDD RFLQRANKVA
LTPGVSWAEH SKGTNAIGTT LVEETPTVVH GGEHFIHANN FLTCSAAPIF DPRGEMLGVL
DVTGDQRSYH QHTMGLVRMS ARMIENQWLS DDYGNRLRLH FHGRAEFIGT LLEGIIVVGV
DGKILGANRS ALDQLDMSIA ALRMQSLPSL FGITASAVFD HFRTPLPTPM MLHAANGQQF
HVNARFNGPQ RAVVLDMPVT SVEARMPTPA RDAAAAAAAR PPCPLAQAPF SGLRYLDTGD
AQIAATLQKV RRVINRDIPL LILGETGTGK ELLARAVHQD SNRARQPFVA VNCASIPESL
IEAELFGYED GAFTGARRKG AVGRIVQANG GTLFLDEIGD MPLPLQARLL RVLQERNVTP
LGSLKSIPVD IAVIGATHRN LREMIDAGTF REDLYYRLNG LVVRLPALRE RSDLDVVARR
ILLAECPQDT PAIDASVLAL FKAYAWPGNL RQLANVLRTA AVMGAGESHI CEHHLSDDFL
EDVRRVRPQA AAIAPAFAPA PAPSPAPDFA ATQAAYAAAA PEPLPPPSQD AEPSSAAAPS
APRTLGEAEI EMIRSALAAA DGNISVASKR LGISRNTIYR KLRWNKAG
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