Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6214 |
Symbol | |
ID | 7975430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 944467 |
End bp | 945723 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644796784 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_002948043 |
Protein GI | 239820858 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.111664 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCATCCG ACGCTTTCAA ACACACCGCC GCCGCCGCCG AGCCCACGCC ACCGCCCGCC ACGCCGCAGG GGCCGCTCGC CGGCATCCGG ATCCTCGACA TGGCCACCGT GATCGCGGCG CCCTTCTCGG CCTCGCTGTG CGCCGACATG GGCGCCGAGG TCGTCAAGCT GGAGCTGCCC GAAGGCAACG ACCCGCTGCG CTCGCTCTCG CCCACCACGC CGGACCATGC GCTGTTCTGG AAGGTCTCGA ACCGCGGCAA GAAGGGCGTG TCGCTCGACG TGCGCAAGCC GGAGGGCCGT GCGCTGTTCC TGCGGCTGAT CGCGTCCTTC GATGTGCTGG TCGAGAACTT CCGCACCGGC ACGCTCGACA AGTGGGGGCT CGACGCGCCC ACGCTGTGGT CGGTCAACCC CAGGCTCGTC ATCCTGCGCG TCACCGGCTT CGGCCAGACC GGCCCGTATG CGCAGCGTCC GGGCTTCGCG CGCATCTTCG AGGCGATGAG CGGCTTCGCC CACCTGACCG GCGAAAGCGG CCGCAGTCCG CAGCACATGA ACTATCCGCT CGGCGACGTC ATCGCGGGCC TGTTCGGCGC CTTCGCCATC TCCACCGCGA TCGCGGAACG CCATCGCCAT CCCGACGCAC CGGGCCGGGA GATCGACCTC GCGGCGACCG AGGCCATGTT CCGGCTGCTC GAAGCGCTGC CGGTCGAGCA CGAGGTGCTG GGGCAGGCGC GCAGCCGCTC GGGCAGCCGG GCCACCTACA CGGCACCCTC CAACATGTAC CGCACGGCCG ACGGCCACTG GGTCACGATC GTGGGATCGT CCGACCCGAT CTTCAAGCGC ATCTGCCAGG CCATGGGCCA GCCGGCGCTG GCGCACGACC CGCGCTTTGC GACCACGCCG GACCGGGTGC AAAACATCGA CGAGATCGAT GCGATCGTCG CCGGCTGGTG CGAGTGCCAG ACGCTGGCAG CGCTGTCCGA GGCCCTGACC CGCGGCGGCG TTCCCCACAG CAAGGTCTAT GCGGTGGACG ACGTGATGGC CGATCCGCAC TTCATTGCGC GCGAAGCCAT CATCCGCTTG CCCGATCCGG ACCTCGGGTC GCTGCCCGCG CCCGCGATCG TGCCGCGCTT CTCCGGCTTC AAGCCCGCGC CGCCGCGCAC CGGGCCGGCG GCCGGCGAAC ACAACGCGGA GGTCTACGGT GCGCTAGGCC TTGGCAGCGA TGCGCTGGAC CGGCTGCAGC GCGAGGGCGT GATCTGA
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Protein sequence | MPSDAFKHTA AAAEPTPPPA TPQGPLAGIR ILDMATVIAA PFSASLCADM GAEVVKLELP EGNDPLRSLS PTTPDHALFW KVSNRGKKGV SLDVRKPEGR ALFLRLIASF DVLVENFRTG TLDKWGLDAP TLWSVNPRLV ILRVTGFGQT GPYAQRPGFA RIFEAMSGFA HLTGESGRSP QHMNYPLGDV IAGLFGAFAI STAIAERHRH PDAPGREIDL AATEAMFRLL EALPVEHEVL GQARSRSGSR ATYTAPSNMY RTADGHWVTI VGSSDPIFKR ICQAMGQPAL AHDPRFATTP DRVQNIDEID AIVAGWCECQ TLAALSEALT RGGVPHSKVY AVDDVMADPH FIAREAIIRL PDPDLGSLPA PAIVPRFSGF KPAPPRTGPA AGEHNAEVYG ALGLGSDALD RLQREGVI
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