| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6207 |
|---|
| Symbol | |
|---|
| ID | 7975097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 938015 |
|---|
| End bp | 938848 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644796777 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002948036 |
|---|
| Protein GI | 239820851 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATC TGAATACTCA CAAAGCTGCT CACGCCGGCA GGCGCGCGTT GGTGACCGGC
GCATCCAGCG GCATCGGCGC GGCCATCGCG CGTGAGCTCG CGGCGCTGGG CGTCGATCTC
GTGCTGACGG CGCGGCGCCG CGACGCACTC GAGGCGGTCG CCGCGACCTG CAAGGGCGTC
AAGGTCGAGA TCATCACCGG GGACCTCGGC AAGCCCGATG CCGCGCGTGC GCTGTGGGAC
GAGGCGATCG CCGGCGGCCC GATCGACATC CTGATCAACA ACGCCGGGTT CGGCTACTTC
CGCCGCTTCG ACGAGGTCGA CTGGGCGCGC GACGCGGAGC TCGTGCAGCT CAACATGACC
TCGCTCGTCG CGCTCGCGCG CTGCTTCGTC GACGCGCGCA AGGCAAGCAC CGGACCTGCG
CACATGGTGA ACATCGCGTC GACGGGCGCG TACCAGTCGG TGCCGAACAT GGCGCTGTAC
GCCGCGTCGA AGGCGTTCGT GCGCAACTTC AGCGAGGGCC TGCATGACGA GCACCGCGGC
ACGCCGCTGA CGGTGACCTG CGTCTGCCCT GGCGGCACCG AAACGGCCTT CCACGCCGCG
TCGGGCGGGG GCGACTACTC GTGGATCGCG AACGCCTCGA CGAAAAGCGC TGAGTTCGTG
GCGCGCGCCG CCATCCGCGC GATGCTGCGC GGCAAGCGCA CCGTGGTGCC CGGCCTGTTC
AACAAGCTGT CGTGCCTCAG CGTGCGATTC GTGACGCGGC GGTTCGCATC GCGGGTGGCC
ACTCAGGTGC TCGGCAAGCC GCGGCTCGCG CTGCCGGCCC GAAGAGAGGC CTGA
|
|---|
| Protein sequence | MSDLNTHKAA HAGRRALVTG ASSGIGAAIA RELAALGVDL VLTARRRDAL EAVAATCKGV
KVEIITGDLG KPDAARALWD EAIAGGPIDI LINNAGFGYF RRFDEVDWAR DAELVQLNMT
SLVALARCFV DARKASTGPA HMVNIASTGA YQSVPNMALY AASKAFVRNF SEGLHDEHRG
TPLTVTCVCP GGTETAFHAA SGGGDYSWIA NASTKSAEFV ARAAIRAMLR GKRTVVPGLF
NKLSCLSVRF VTRRFASRVA TQVLGKPRLA LPARREA
|
|---|
| |