Gene Vapar_6191 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6191 
Symbol 
ID7975081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp924572 
End bp925489 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content72% 
IMG OID644796761 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002948020 
Protein GI239820835 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.395168 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGCAGA TCGAAGACCT TCGCTTGGCT GCCGCGCTGC TGCGCGAGAG CTCGCTCAGC 
GCGGCCGCGC GCTCGCTCGG CGTCACGCCG CCCGCGCTGT CGATGCGCCT GCGCAAGCTC
GAGGCCTCGC TGGGCCTGGT GCTGGCCAAC CGCACGTCGC GCAAGCTGCA CCTAACCTCG
GAAGGCGAAC GATTCGGGCG CGAGGCCTAT GAACTCCTGC TGAAGTTCGA CGGCCTGCGC
GAATCCCTGC AGCGCGATGA CCGGCGCCTG AGCGGAACGC TGCGCGTGGC CGCGTCCTTC
GGCTATGGCC GCACGCATGT CGCGCCGTGG CTGTCCCGTT TCTCCCGCCT GCATCCGGCC
CTGCGGCTGC AGCTGGACCT GCGTGAAACG CCGTGGCCCG ACAAGCACGA TTCCGACGCG
GTGGTGCACG TGGGCGCGGT GCGCGACTCG TCCTGGGTGG CGCACCCGCT CGCCTCCAAC
GAACGCTGGC TGTGCGCGAG CCCCGGCTAC CTGCGCGAGC ACGGCACGCC CCGCAACCCG
GCGGACCTGG CCTACCACGC CTGCATCTGC ATCCGCGAGA ACGACGAGGA CGTGACGCTG
TGGCACATGC GGCCCGCGGG CAGCGGCGCC CGCAAGGGCG AGACGCTGCG CATCAACCCG
GCCTTCGTCA GCAACGACGG CAGCGTGGCG CGCCAGTGGG CCGAGGACGG CCTCGGTATC
GTGCTGCGCT CCCAATGGGA CGCCGCCGAA GCGCTGGCCG CCGGCCGCCT CGAGCGCGTG
ATGGCGGACT GGGAATTCGG CGCCGCCCCG GTGGTGGTGC TCGTGCCCAC GCGCAAGGGG
CGCAGCGCGC GGGTGCAGGC GCTGGTCAGC TTCCTGGTGG AAGCGGCGGG GGCAGCGGGC
CGGCCGAGCG CTGGGTGA
 
Protein sequence
MMQIEDLRLA AALLRESSLS AAARSLGVTP PALSMRLRKL EASLGLVLAN RTSRKLHLTS 
EGERFGREAY ELLLKFDGLR ESLQRDDRRL SGTLRVAASF GYGRTHVAPW LSRFSRLHPA
LRLQLDLRET PWPDKHDSDA VVHVGAVRDS SWVAHPLASN ERWLCASPGY LREHGTPRNP
ADLAYHACIC IRENDEDVTL WHMRPAGSGA RKGETLRINP AFVSNDGSVA RQWAEDGLGI
VLRSQWDAAE ALAAGRLERV MADWEFGAAP VVVLVPTRKG RSARVQALVS FLVEAAGAAG
RPSAG