Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6169 |
Symbol | |
ID | 7975059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 898701 |
End bp | 899366 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644796739 |
Product | two component transcriptional regulator, LuxR family |
Protein accession | YP_002947998 |
Protein GI | 239820813 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4566] Response regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATCCTG CCACCGATCT CTCCCCACCC TTGCAGGCGG ACCGCGATAC GCGCGTCGTC TACATCGTCG ATGACGACGA ACTCGTGCGC AATGCGCTGG GCAGCCTGCT GCGTTCGATC GACCTGGAGG TCCGCACCTT CGCCGACACC GAGGAATTCC TTGCCGCGCC GCGTGCCGGC GGCGCTTCCT GCCTGGTGCT GGACGTGCGA CTGCGCGGCC AGAGCGGCCT GGCCTTGCAG CAAACCCTGC TGCAGCCCGG CCGCGCGCCG ATCCCCATCA TCTTCATGAC CGGCCACGGC GACATCGCCA TGACCGTGCG GGCGATGAAG GCCGGCGCCA TGGACTTCCT GAGCAAGCCC TTTCGCGAGC AGGACATGAT CGATGCGGTC ACCGCCGCGC TGGACAAGGA CGCCAGGCGC CTGGCGCTCG GGCACTCGCT GCATGCCTTG CGCGTGTGCT GGGACTCGCT CACGCCGCGC GAGCGCGAGG TGGTGCAGCA TGTGGCCGCG GGCCTGATGA ACAAGCAGAT CGCCGCCCGC ATGGGCATTG CAGAGATCAC CGCCAAGATC CATCGGGGCC AGGCGATGCG CAAGATGAAC TCGCGCTCGG TCGCGGAGCT GGTGCGCAAG ATGGAAGCGC TCGGCCTCCT GCAGGCCGCG CACTGA
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Protein sequence | MHPATDLSPP LQADRDTRVV YIVDDDELVR NALGSLLRSI DLEVRTFADT EEFLAAPRAG GASCLVLDVR LRGQSGLALQ QTLLQPGRAP IPIIFMTGHG DIAMTVRAMK AGAMDFLSKP FREQDMIDAV TAALDKDARR LALGHSLHAL RVCWDSLTPR EREVVQHVAA GLMNKQIAAR MGIAEITAKI HRGQAMRKMN SRSVAELVRK MEALGLLQAA H
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