| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6131 |
|---|
| Symbol | |
|---|
| ID | 7975577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 852643 |
|---|
| End bp | 853587 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644796687 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002947961 |
|---|
| Protein GI | 239820776 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.554613 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTGC TGCTCGGCGC CGCGGCCCAG GCCCAAGCGC AGGCGCCGGC CTGGCCCGCC
AAGCCCGTGC GGCTGGTCGT CGGCTTCCCG CCGGGCGGCA TCGTCGACAC CGTCGCACGC
CAGCTGCAGC CGCGCCTGCA GGCCGCGCTC GGCCAGACCG TGATCGTCGA CAACCGCAGC
GGCGCCGGCG GCACGCTGGC GGCGGCCGAG GTGGCGCGCG CCGTGCCCGA CGGCCACACG
CTGCTGATGG TGTTCGACAG CTACGCCACC TATCCGCTGG TCTATCCGAA GCTGAGCTTC
GACATCGCCA AGGACCTGCA GCCCGTGACC CAGGTCGCGA GCAATCCGCT GGTGCTGGTG
GTCAACCCGA AGGTGCAGGC CAAGGACTTC CAGCGCTTCG TCGGTCTGCT CAAGGCGCAG
CCCGGCGGCC TCAACTACGC GAGCGTCGGC CCGGGGTCGA GCAACCATCT CACGGCCGAA
TACTTCAAGG CCGTGAGCGG CACCTTCGTC ACGCACATTC CCTACCGCGG CGGCGGCCCG
GCCCAGCAGG ACCTGCTGGG CGGACAGGTC GAGATGATGT TCCTCTCGGC CGTGCTGGCC
CAGCCGCATG TCAACGCGGG CCGGCTGCGC GCCCTGGCGC AGACCGGCGC CCAGCGCGCG
CCCGCCTATG CCGAGGTGCC GACCGTGGCC GAGAGCGGCT ATCCGGGCTT CGAAGTGAAT
TCCTGGGTCG GGCTGCTCGC CCCGGCCGGC ACGCCGCGCG CCGTGGTCGA CCGGCTGCAG
GCCGAAGTGC GCAAGGCCGT GACCGAGCCG GCCTTCCAGC AGCGGCTGCG CGAGCAGGGC
CTGACGGGCA TCGCCAACAC GCCCGAGCAG TTCGCCGCCG TGCTGCGCAC AGAGCAGGAC
AAGTGGGCCC GCCTGGTGCG CGAGCGCCGC CTGAGCCTCG AATAG
|
|---|
| Protein sequence | MLLLLGAAAQ AQAQAPAWPA KPVRLVVGFP PGGIVDTVAR QLQPRLQAAL GQTVIVDNRS
GAGGTLAAAE VARAVPDGHT LLMVFDSYAT YPLVYPKLSF DIAKDLQPVT QVASNPLVLV
VNPKVQAKDF QRFVGLLKAQ PGGLNYASVG PGSSNHLTAE YFKAVSGTFV THIPYRGGGP
AQQDLLGGQV EMMFLSAVLA QPHVNAGRLR ALAQTGAQRA PAYAEVPTVA ESGYPGFEVN
SWVGLLAPAG TPRAVVDRLQ AEVRKAVTEP AFQQRLREQG LTGIANTPEQ FAAVLRTEQD
KWARLVRERR LSLE
|
|---|
| |