| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6095 |
|---|
| Symbol | |
|---|
| ID | 7975541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 812303 |
|---|
| End bp | 813202 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796651 |
|---|
| Product | phosphonate metabolism PhnJ |
|---|
| Protein accession | YP_002947925 |
|---|
| Protein GI | 239820740 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3627] Uncharacterized enzyme of phosphonate metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.733291 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCA CCACCGAATA CAACTTCGCC TACCTCGACG AGCGCACCAA GCGCATGATC
CGCCGCGCCA TCCTCAAGGC CGTGGCCATT CCGGGCTACC AGGTGCCCTT CGGCTCGCGC
GAGATGCCGC TGCCCTACGG CTGGGGCACC GGCGGCATTC AGGTGACGGC CGCGGTGATC
GGCCCGCGCG ATGTGCTCAA GGTGATCGAC CAGGGCTCCG ACGACACCGT CAACGCCGTC
AACATCCGCC GCTTCTTCGA GCGCACCACG GGCGTGGACA CCACCACGCG CACGGCCGAC
GCCACGCTGA TCCAGACGCG CCACCGCATC CCCGAAGCGG GGCTCGCCGA AGGGCAGGTG
CTGGTCTACC AGGTGCCGGT GCCCGAGCCG ATGCAGCGGC TGGAGCCGCG CGAGACCACC
ACGCGCACGC TGCACGCGCT GGCCGAGTAC GGCCTGATGC ACGTGAAGCT CTACGAAGAC
ATCGCGCGCT ACGGCCACAT CGCCACCACC TACGACTACC CGGTGCTGGT GAACGGCCGC
TACGTGATGT CGCCGTCGCC GATCCCCAAG TTCGACAACC CCAAGATGCA CATGAATCCG
GCGCTGCAGC TGTTCGGCGC CGGCCGCGAG AAGCGCATCT ACGCCGTGCC GCCCTACACG
CCGGTCGAAA GCCTGAGCTT CGAGGACCAC CCCTTCGAGA TCCAGCGCTG GGACACGCCC
TGCGCGCTGT GCGGCGCGAC CGACAGCTTC CTCGACGAAG TGATCACCGA CGACCGGGGC
GCGCGCATGC ACGTGTGCTC CGACTCCGAC TACTGCCAGT CGCGGCAGCA GGCGGATGCT
GCCACTTCGT CCGACCCCGT GACCGATTCG GCGGCCAGCG TGGACGGAGC CCTCGCATGA
|
|---|
| Protein sequence | MTTTTEYNFA YLDERTKRMI RRAILKAVAI PGYQVPFGSR EMPLPYGWGT GGIQVTAAVI
GPRDVLKVID QGSDDTVNAV NIRRFFERTT GVDTTTRTAD ATLIQTRHRI PEAGLAEGQV
LVYQVPVPEP MQRLEPRETT TRTLHALAEY GLMHVKLYED IARYGHIATT YDYPVLVNGR
YVMSPSPIPK FDNPKMHMNP ALQLFGAGRE KRIYAVPPYT PVESLSFEDH PFEIQRWDTP
CALCGATDSF LDEVITDDRG ARMHVCSDSD YCQSRQQADA ATSSDPVTDS AASVDGALA
|
|---|
| |