| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6045 |
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| Symbol | |
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| ID | 7975330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 768040 |
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| End bp | 769029 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644796604 |
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| Product | isochorismatase hydrolase |
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| Protein accession | YP_002947878 |
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| Protein GI | 239820693 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1335] Amidases related to nicotinamidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.406961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTCG ACAACCTCGA TCCAAAAACC TCGGCGCTGC TGGTCATCGA CCTGCAAAAC
GCATTCATCC ACGACAAGGG CACGCTTGGA ATTTCAGGCG TCGACACACA GCGCCTGTCG
GCGATCGTGC CGGTGCTTGC GGCTCTCATT CCGCGCTGCC AAGCCGCGGG CATTCCAGTG
ATCTGGACCG TGCAGGAACA CTTCGCGGTC GACGCGAGCC GCGCGCACAA GAAGCTCGCG
GGCCACACCT CGCGTCGCAA GCAGGTGTCG GCGCTCGCCG GCACCTGGGA CGAAGAGATC
GTCGAAGAAT TGAAGCCTCT GGCGGCCGCC AATCCGGCCT ACGTGATCCG CAAGCATCGC
TTTGGCGCCT TTTACGAAAC GCGCCTCGAG ATGATGCTCA AGATGCTGGG CACGCGCACG
CTCTTCGTGG CCGGAACCAC TGCCAATGCA TGCGTCGAAA CCAGCATCCG TGAGGCCTAT
CTGCGCGACT ACGACGTGGT GGCACTGAAC GACTGCATCT CGGGCGTCAA TGCAGAGTGG
GAAGAGACGG CCAAGAAGGT CTGGAAGCAG TACTTCTGCG AGATTTCCGA TGCGGCGGAG
ATGCGCGGCT GGATCGACGC GAAGTCCGCG CCTCGCACGC TGAGCTACGG CCACATGCTT
CTGATGGTGC AGGACGTGCC GCGCTCGACC TCGTTCTACG TCGACCAACT CGGTTTCACG
GTCCGACCCG CAAAGCCACT GGCTGATGGC CGGCCGTTCA CGGCCTTCCA TCAAGGTGTA
GCCATCGTCG GCGGGCGGGC GCCTTCGCAC CGGCAGATCG ATCACATGGC ATTCGAGGTC
AACGACGTGC GCGCACTGCG CGACAGGCTG AAGAAGGCGA ATATCGAGTT TCAAGAAGAC
CTGCATGACG GACCGTACGG GCTGACCATT TACGTGACCG ATCCCGACGG CACGCGCGTC
GAGCTGTACC AAGTAGGCGC GACCGCCTGA
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| Protein sequence | MDLDNLDPKT SALLVIDLQN AFIHDKGTLG ISGVDTQRLS AIVPVLAALI PRCQAAGIPV
IWTVQEHFAV DASRAHKKLA GHTSRRKQVS ALAGTWDEEI VEELKPLAAA NPAYVIRKHR
FGAFYETRLE MMLKMLGTRT LFVAGTTANA CVETSIREAY LRDYDVVALN DCISGVNAEW
EETAKKVWKQ YFCEISDAAE MRGWIDAKSA PRTLSYGHML LMVQDVPRST SFYVDQLGFT
VRPAKPLADG RPFTAFHQGV AIVGGRAPSH RQIDHMAFEV NDVRALRDRL KKANIEFQED
LHDGPYGLTI YVTDPDGTRV ELYQVGATA
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