| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6031 |
|---|
| Symbol | |
|---|
| ID | 7975316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 755539 |
|---|
| End bp | 756450 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644796591 |
|---|
| Product | 2-dehydro-3-deoxygalactonokinase |
|---|
| Protein accession | YP_002947865 |
|---|
| Protein GI | 239820680 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3734] 2-keto-3-deoxy-galactonokinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0444196 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCGT CATTGATCGC CATCGACTGG GGCACTTCCA ACCTGCGCGC GAGCCTGCTC
GATGCGCATG GCGGCCTCCT CGAAGCCCGC AGCGCACCCG GCGGCGTAAT GGCCGTGCCC
GACCGGCGTT TCGCCGAGGC ACTGCTGGCG CTGTGCGGCG ACTGGATCGA CGCGCATGCG
GTGCCGCTGA TTGCGAGCGG CATGATCGGC AGCCGCCAGG GCTGGCAGGA GGCGCCCTAT
GTCGCCTGTC CGGCCGGGCT GCCGGCCGCC GCGGCGCAGC TGGTGCGGGT GGAGGTCAGG
CCCGGTGCGG TGCTGCACAT CGTGCCCGGC ATCCGTTGCA TCGGCATCGA CGGCGTGCAC
GACGTGATGC GCGGCGAGGA AACCCAGCTC TGGGGCGCAG GCCTTGCGGC CGGCGACTGC
TGCGTGCTGC CCGGCACGCA CAGCAAATGG GCCTGGCTGG GCGAGGAGGG CAAGGTCGAG
CGCTTCGAGA CCTTCATGAC CGGCGAGTTC TATGGCCTGC TGACGAAGCA CGGCATCCTC
GGCCGGCTCA TGGCGTTCGG CACGGCGCGG CCCGAGACCT TCGATGCCGG CGTCCGGCTG
GGCCTGGCAC AGCATGGCAA CGCATTGCAC GTGGTGTTTG CGGCGCGCAC CGCCGGGCTC
ATGGGCGACA TCGATCCGGA GGGCCTGCCG GACTATCTCT CGGGCATCCT GATCGGCCTG
GAGATCGCGA GCGCGACCGC GCGGCATCCG CAGCGCAGCG TCACCTTGCT GGGTGACGAC
GACCTGTGCA GCCGCTACGA AACCGCGCTT GGCATCGCCG GGGTGGACAC GCGCCGCGCG
AGCGACGGGG CGACCACGCG AGGGCAATGG CGCGTCGCCC TCCAGGCTGG CCTCGCGAAG
TACATGGCAT GA
|
|---|
| Protein sequence | MKASLIAIDW GTSNLRASLL DAHGGLLEAR SAPGGVMAVP DRRFAEALLA LCGDWIDAHA
VPLIASGMIG SRQGWQEAPY VACPAGLPAA AAQLVRVEVR PGAVLHIVPG IRCIGIDGVH
DVMRGEETQL WGAGLAAGDC CVLPGTHSKW AWLGEEGKVE RFETFMTGEF YGLLTKHGIL
GRLMAFGTAR PETFDAGVRL GLAQHGNALH VVFAARTAGL MGDIDPEGLP DYLSGILIGL
EIASATARHP QRSVTLLGDD DLCSRYETAL GIAGVDTRRA SDGATTRGQW RVALQAGLAK
YMA
|
|---|
| |