Gene Vapar_5928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5928 
Symbol 
ID7974967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp631815 
End bp632462 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content63% 
IMG OID644796493 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002947767 
Protein GI239820582 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.511087 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCCCATGA AGACAGCGAG CACAGCAGAA GCCCGGACGC GCGATGCGGA TCGTTCACGC 
AAGGCCATCC TCGAGGCGGC GAGAAAGGAG TTCTCCGTGC ATGGTCTCGG CGGCGCGCGG 
CTGGAGCGGA TCGCAGCCGA GGCCGGCGTG CACAAGCGGT TGGTGTACTA CTACTTCCAG 
GACAAGGATG GACTGTTCTC CGCCGTGCTC GAGAGCGTGT ACGAGGAGAT CCGGGACGCG 
CAGCTCTACC TCGATCTCAA GGACATGGCG CCGCTCGCTG CGTTGCGCCG GCTCGTCGAA 
TTCACCTGGG ACTACTACAT CGCGCACCCG GAGTTCATCA CGTTCCTGAA CAGCGAGAAC 
CTGCACAAGG CGAAGCACCT GGCCGCCCTG CCCCGCATCA AGGAGTTGAA TTCCCCGCTC 
TTGCAGACCC TTGCGAACAT CCTCGAGCGG GGACAGAAGG ACGGGGTGTT CCGCGCGGGC 
ATCGACCCCA TGCAGCTGTA CATCACGATG GCGGGCTGCG CCTACTTCTA CCTGTCCAAC 
ATCCACACGC TCTCTGTCGG CTTCAGCTGC GAGCTCGGCA GCCAGAAGAT GCTGACCCAG 
CGGATGCTGC ACATCATTGA CGTCGTCACC GCCTACGCGC TGCGCTAG
 
Protein sequence
MPMKTASTAE ARTRDADRSR KAILEAARKE FSVHGLGGAR LERIAAEAGV HKRLVYYYFQ 
DKDGLFSAVL ESVYEEIRDA QLYLDLKDMA PLAALRRLVE FTWDYYIAHP EFITFLNSEN 
LHKAKHLAAL PRIKELNSPL LQTLANILER GQKDGVFRAG IDPMQLYITM AGCAYFYLSN 
IHTLSVGFSC ELGSQKMLTQ RMLHIIDVVT AYALR