Gene Vapar_5809 details

Gene Information

• Locus tag: Vapar_5809
• ID: 7974930
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 514795
• End bp: 515502
• Gene Length: 708 bp
• Protein Length: 235 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644796390
• Product: transcriptional regulator, LuxR family
• Protein accession: YP_002947664
• Protein GI: 239820479
• COG category: [K] Transcription
• COG ID: [COG2771] DNA-binding HTH domain-containing proteins

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.962539
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGAGT GGACCCAAGA CGTTCTCGGT CGGTTGGACG AGGCCAGCGA GCCATCCCAG 
GTGCTCGCGC AGGTCAGCGT GGCAGCCAGG CAGCTCGGTT TCGAGCACTG CGCCTACGGG 
CTGCGCACCC TCGTGCCCTT CACCCGGCCG AAGACTTTGA TGTTCAGCAC CTACGATGAG 
CGATGGAGCC GCCGCTACAT CAGTGCCGGA TATCTCCAGG TGGATCCCAC GGTCGCCCAC 
GGCGTGCACA GCGGGACGCC CGTGATCTGG AGCAACGAAG TCTTCCGGGA CGCGCCGCAG 
ATGTGGGACG AAGCGCGCTC CTTCGGCCTG CGCGTCGGCT GGGCGCAATC GGTCTTCGAG 
CCCGACGCAC GGGTCGGGAT GCTGTCGCTT GCCCGCTCGA GCGAACCGCT GACGGCTGCG 
GAGATGCGCG CCAAGGACCT CCTGTTCCAG GGGCTGGTGA ATAAGGCCCA CCGCGCGTTC 
TGCCGGCTCC TGGGCGGCCC GCTCGCGGGG ATCGAACCGC TGACGAAGCG GCAGGTGGAG 
GTGCTGCGCT GGACGGGCGA CGGCAAGACG AGCGACGAAA TCGCGGCCAT CCTCTGCATC 
TCGAAGCCCA CGGTCGATTT CCATCTGAGG AACGCAATGG CGAGATTGGG TGCCAGCACC 
AAGAGCTCGG CCGCGGCGTT CGCTTCACGT CTCGGGCTCC TGAACTGA 

 

Protein sequence

MNEWTQDVLG RLDEASEPSQ VLAQVSVAAR QLGFEHCAYG LRTLVPFTRP KTLMFSTYDE 
RWSRRYISAG YLQVDPTVAH GVHSGTPVIW SNEVFRDAPQ MWDEARSFGL RVGWAQSVFE 
PDARVGMLSL ARSSEPLTAA EMRAKDLLFQ GLVNKAHRAF CRLLGGPLAG IEPLTKRQVE 
VLRWTGDGKT SDEIAAILCI SKPTVDFHLR NAMARLGAST KSSAAAFASR LGLLN