Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5801 |
Symbol | |
ID | 7974922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 503942 |
End bp | 504934 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644796382 |
Product | hypothetical protein |
Protein accession | YP_002947656 |
Protein GI | 239820471 |
COG category | [S] Function unknown |
COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.744071 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGTCC GATCGCTTCC TCCCAAACTC CTCCTGCCGT GGCTCGTCGC CGGCACCGCC TGGCTGTGCG CCGCCCATGC GTTCGCGGCC GATCCCTTTC CGTCGAAGCC GGTGAAGATC CTGGTCGGCT TCTCGCCCGG CGGCTCCAAC GACGTCGTGG CACGCCTGAT CGCACCGAAG CTGGCCGAGG GGCTCGGCGC GCAAGTGCTG GTCGACAACC GGCCCGGCGC CGGCGGCAAC ATCGCGGTCT CGGCCATGCT CACGGCGCCT GCGGACGGAC ACACCCTGCT GATGTGCACC ACCGGAACCC TGTCGATCCA GCCGCACGTT CTGAAAAGCA TGCCCTTCGA CCCCGAGAAG GACATCGTGC CGGTCACGCA GGTCACCAAC GCGCCCTACA TGCTGATGGT CAACTCGACG CTGCCGGTGA CCAGCGTCAA GGAGCTCGTC GCCTACGCCA GGCAGAAGCC GGGCGAACTC AACTTCGCTT CTTCCGGAAC CGCAACGGGC GGCCACCTGG CGGGCGAGAT GCTGAAAACG CGCGCGGGCA TCGACATCGT TCACGTGGCC TACAAGGGAA CCGGCCAGGC GATGACGGAC CTGCTGGCGG GTCAGGTCTC GATGATCTTC GACCAGCCCG TGAGCTCGAT GCAGTACGCG CGTTCGGGCA AGCTGCGCGC GCTGGCGGTG GCCAGTTCGC GCCGGCTGGC GGCGTTCCCC GATATTCCGA CCGTGACGGA AGCCGGCATT CCCGACTTCG AACCCGTGAC CTGGGCGGGC ATCTGTGCGG CCAAAAATAC GCCGCCCGCC GTCGTCGAGC GCATCCAGCG CGAAGTCGCC AAGGTGCTCG CGATGCCCGA GATCGCCAAG CGGCTCGCCG CCGACGGCCT GGAACCCGTG GGCAGCACGC CCGAGCAGTT CCGTGCGTTC CTGGCCGCCG ACAAGCGCAA GTGGGGCCGC GTGGTGAAGG ACGCCGACGT CAAGGCCGAA TGA
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Protein sequence | MNVRSLPPKL LLPWLVAGTA WLCAAHAFAA DPFPSKPVKI LVGFSPGGSN DVVARLIAPK LAEGLGAQVL VDNRPGAGGN IAVSAMLTAP ADGHTLLMCT TGTLSIQPHV LKSMPFDPEK DIVPVTQVTN APYMLMVNST LPVTSVKELV AYARQKPGEL NFASSGTATG GHLAGEMLKT RAGIDIVHVA YKGTGQAMTD LLAGQVSMIF DQPVSSMQYA RSGKLRALAV ASSRRLAAFP DIPTVTEAGI PDFEPVTWAG ICAAKNTPPA VVERIQREVA KVLAMPEIAK RLAADGLEPV GSTPEQFRAF LAADKRKWGR VVKDADVKAE
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